SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15163

Length: 2289 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15163
CGTCGTGACCTTGGCTGTCACTCAGAATATAGGTCAATGGCAAACACATGCCTTACAAAACCTAAAAAATCACTATGGTCGTTAAGACCCACCCACGAGAAGCATATTCTTCCGTCGTCGTTCCTAAATTTTAATGGCTTAAATGAAAGGCCCACCTTCGGCTAAAGTTCCAAAAGTCGCACGCAACCAACCAGAAATTTGGACCTTTCTCGCGTTTAGGCCTTACACACGCATCCGCTCTATAAGCGACGTGAGCTTTTTATATATCCTCCTCGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAAATCATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACTGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGTGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCTGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGGGCTCTTATTGTATCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAATGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAAATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGGGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATTAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATCCTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCCATTCATTAGCC

Ace file of the UniGene sp_v1.1_unigene15163

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Picea sitchensis RepID=A9NUJ0_PICSI	-	-	95%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	aspartate aminotransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	90%
Blast2go	Cysteine and methionine metabolism	00270	90%
Blast2go	Arginine and proline metabolism	00330	90%
Blast2go	Tyrosine metabolism	00350	90%
Blast2go	Phenylalanine metabolism	00360	90%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	90%
Blast2go	Carbon fixation in photosynthetic organisms	00710	90%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	90%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	90%
Blast2go	Biosynthesis of phenylpropanoids	01061	90%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	90%
Blast2go	Biosynthesis of plant hormones	01070	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	90%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	90%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	DNA binding	GO:0003677	Molecular Function	90%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Aspartate/other aminotransferase	IPR000796	-	90%
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	90%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg:

Fln protein: MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALIVSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI*

Protein Length: 433

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAATATAGGTCAATGGCAAACACATGCCTTACAAAACCTAAAAAATCACTATGGTCGTTAAGACCCACCCACGAGAAGCATATTCTTCCGTCGTCGTTCCTAAATTTTAATGGCTTAAATGAAAGGCCCACCTTCGGCTAAAGTTCCAAAAGTCGCACGCAACCAACCAGAAATTTGGACCTTTCTCGCGTTTAGGCCTTACACACGCATCCGCTCTATAAGCGACGTGAGCTTTTTATATATCCTCCTCGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAAATC_-_ATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACTGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGTGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCTGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGGGCTCTTATTGTATCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAATGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAA___ATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGGGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATTAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATCCTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCCATTCATTAGCC

Fln Alignment:

sp_v1.1_unigene15163___MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALIVSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI
A9NUJ0_______________MAMAMAMSRSNAGRGIRLMSTSGWWKAVEPAPKDPILGVTEAFLADTDPNKVNVGVGAYRDDQGKPVVLQSVREAERRILGKENMEYLPMGGSVKMVEESIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDANVPQRTFHYYHPETRGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHYPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALLVYSILSDPDLKALWHKEVKVMADRIIGMREALRGNLENLGSPLSWNHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEKELKAGAV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1091	66		33		0.997452
1449			8	91	0.999766
1886	10		90		0.90298
1985		37		62	1.0
1997		87		12	0.992554
2013	48	51			1.0
2078	10			90	0.90298
2279		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain