SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15161

Length: 1365 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15161

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellular nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R835_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cellular nucleic acid binding	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	60%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS35

Fln msg:

Fln protein: MNFDNGGARRGRRIQSDVVGRRTFRRSEPYRLYPNDRNGYGPRSSRPIELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHMAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCMNSPVCNGCGEPGHLVRDCPRVQSPPRMMAPRGGFETRGGFETRGGFDDFKIIYCHVCGGRGHLSMDCPSDPLFMRGGFRR*

Protein Length: 249

Fln nts: ATGGGGATCTTCCGTTTCAAGTGAACACTCACGCCGAAGCCGTCAGGACCTTTGGTTATAAGGGTGTTGTGTAATTCTAAACCCTATGGGGGTGTATTCTCAGAGGTTGAAGCTGAGGGGAGCGTCCGCTCGAGGTACGCGAAGCACCTACGCAGCGGCATTCGAACTCTCGACCCATACATCAGATTTCACAGGTGGTTTGATTGCATCTTGAAGCACATTTTGAAGTGATCACTTCAGTTTGCAGAGGTTTCTTAGGGTTGTTTTTTCCATTTGCAGAGGTGACCCTTGAATACAGGTAAGCGTAAGG_-_ATGAATTTTGACAATGGAGGAGCACGGAGGGGACGACGCATTCAGAGTGATGTAGTAGGGAGACGCACATTTCGTCGCAGCGAGCCTTATAGACTATACCCTAATGATAGGAATGGATATGGTCCCAGGTCTTCCAGGCCTATTGAGCTTTGTAACAACTGCAAGCGAACAGGGCACTATGCACGAGAGTGTCCGAATGCTTCTGTATGCAACAACTGTGGAGTTTCAGGGCACATTGCATCGAAGTGTCCAAAAGAGCAATTATGCAGGAATTGCAAGAAGCCTGGTCATCTTGCAGCTGATTGCCGCAATGAGCCTGTCTGTAACATGTGTGGTAAAACAGGTCACATGGCAAAGGAATGTTCTGCTCATGAGCTAGGACTTCCAAAATCAGCACTCTGCAAGAAGTGCTATTTGCCTGGGCATATTATGGCAGACTGTCCTAATGACAAGGCCTGCAATAATTGTCGCCAGACTGGCCACTTGGCTCGAGATTGTATGAATAGCCCGGTTTGCAATGGCTGTGGTGAACCTGGTCATCTTGTCAGGGACTGCCCCCGTGTTCAAAGCCCTCCTAGAATGATGGCACCACGTGGAGGGTTTGAAACACGTGGAGGTTTTGAAACACGTGGAGGGTTTGATGATTTCAAGATTATTTACTGCCATGTCTGTGGGGGTCGTGGACATCTCTCTATGGACTGTCCTTCAGATCCACTGTTTATGCGTGGTGGCTTCCGACGTTGA___GAACTTCGGAACTGCTGTACAAATTTGGGAAGTCACACGATGAAGCTTAGTTTCAGTCTTCGGGTGAAGTTGCGGTCTTAATTTTCCAGCCACTTTATACTGGTGTGATTTAGTTTGCCGAATTTATATTAATATTGGCAGTAGATTACTTTATTTCTTTTTAGTGCAAGTGTAAGACTAGTCTGTTACTAAATGCCAGGAAATTAAACTATTTGAACGTTTTCTGCCGGCTTCAACCACAACGATGAATTTTGATAATGTTACTGGAGAATTAAGGCGACAAAAAATTTGTATGGAATGCATGATTTGCG

Fln Alignment:

sp_v1.1_unigene15161___MNFDNGGARRGRRIQSDVVGRRTFRRSEPYRLYPNDRNGYGPRSSRPIELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHMAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCMNSPVCNGCGEPGHLVRDCPRVQSPPRMMAPRGGFETRGGFETRGGFDDFKIIYCHVCGGRGHLSMDCPSDPLFMRGGFRR
A9NS35_______________MNFDNEGSRRGRRIQSDVVGRRTFRRSEPYRPYPHDRNGYGPRSSRPVELCNNCKRTGHYARECPNASVCNNCGVSGHIASKCPKEQLCRNCKKPGHLAADCRNEPVCNMCGKTGHLAKECSAHELGLPKSALCKKCYLPGHIMADCPNDKACNNCRQTGHLARDCVNSPVCNGCGEPGHLVRDCPRVQSPPRIMPPRGGF--GGGF--GGGFDDFKIIICRVCGGRGHLSVDCPSDPLFMRGGFRR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
897	12		87		0.992554
992	9		90		0.999842
993		9		90	0.999842
994			90	9	0.999842
995		9	90		0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain