SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15158

Length: 1720 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15158 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylcoumaran benzylic ether reductase homolog TH6 n=4 Tax=Pinaceae RepID=Q9M523_TSUHE	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	phenylcoumaran benzylic ether reductase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	88%
Blast2go	binding	GO:0005488	Molecular Function	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NmrA-like	IPR008030	-	0.0	88%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUA2

Fln msg: your sequence is longer than subject: 349 - 307

Fln protein: MRRDRSQRARITDLHIFIPILISLLVVYLIFQWQTNLTGLDMANSSKILIIGGTGYIGRHISKASLALGHPTFLLVRETSASNPEKAKLLESFKASGAIILHGSLEDHASLVEAIKKVDVVISALKGPQLTDQQNIIKAIKEVGTIKRFLPSEFGNDVDRTHAVEPAKTMFATKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTTPPRDKVVISGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSLNELVALWEKKIGKSLEKTYIPEEEVLKKIAESPFPLNAIMSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVDEYLSQYV*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTTTTCCTGACAATCTCTATACCACCTCCTCCATTGTTTCTTTCTATAAGTAACTTCGTCTTTGTTTAGGA_-_ATGAGGCGCGATAGATCCCAGAGGGCGAGAATCACCGACCTTCACATATTTATTCCAATTCTAATATCTCTACTCGTTGTCTACCTGATTTTTCAGTGGCAAACCAACTTGACAGGGTTGGACATGGCCAACAGCAGCAAGATTCTGATTATTGGAGGAACAGGCTACATTGGTCGTCATATATCCAAAGCCAGCCTTGCTCTTGGCCATCCCACATTCCTTCTTGTCAGAGAGACCTCTGCTTCTAATCCTGAGAAGGCTAAGCTTCTGGAATCCTTCAAGGCCTCAGGTGCTATTATACTCCATGGATCTTTGGAGGACCATGCAAGTCTTGTGGAGGCAATCAAGAAAGTTGATGTAGTTATCTCGGCTCTCAAGGGACCACAGCTGACGGATCAACAGAATATTATCAAGGCTATTAAGGAGGTTGGAACCATCAAGAGGTTTTTGCCATCTGAGTTCGGGAATGACGTTGATAGAACCCATGCAGTGGAGCCTGCAAAGACCATGTTTGCTACCAAAGCGAAAATTCGCAGGGCCATTGAGGCAGAAGGCATCCCTTACACATTTGTCTCTAGCAACTGTTTTGCTGGGCTTTTCTTGCCAAGTTTGGGGCAGCCGGGCCTTACCACCCCGCCAAGGGATAAAGTTGTGATATCTGGAGATGGAAATGCCAAAGTTGTTTTTGTGAAGGAGGAGGATATAGGGACATTCACCATCAAGGCAGTGGATGACCCTAGAACTCTAAACAAGATCCTGTATTTGAGGCTTCCTGCCAACACATATTCTCTTAACGAGCTTGTAGCTCTGTGGGAGAAGAAGATTGGCAAGTCTCTGGAGAAGACCTATATACCAGAGGAAGAGGTCCTGAAAAAAATTGCAGAGTCGCCATTCCCACTCAATGCTATAATGTCAACCGGCCACTCTATTTTTGTGAAAGGGGATCAAACAAATTTTGAAATCGGACCCGATGGTGTGGAGGCTAGTCAACTCTACCCAGAGGTGAAATACACTACTGTTGATGAATACCTCAGCCAGTATGTCTGA___GGTTGGTTGTGAGAAATGCTTGGCAGAATGATAATGGAGGCAAGTTCGCTTTATCCAGTTTAGATAAGGCTGTTGCTACTGTTACATTTTTAGTGATTAATACGAGCAATAACCAAAGCTGACACTCCTTAATTAGCAGTGGAGACAAATTGTGGCAAATAGTTCATTAGGTAGTAGATGCCTTTTGTTTTGTAGGTTAAGGGAGTTGTGTGGATAGCCAATGATCAATCAAAGTTAAGATTAGTCATATCTTGGCTTATTGGCACGTTGCTATTATGTGAAAAATACTACTTCGCTTAAATATACATCTGGGATTTTAATGAGGTTGTTACTGCTTTCTGTTTTGTATGTTAAGGGAGGTGTGTGGATAGCCTTGATCAATCCAGGTAAAGATCATTCATATCTTGGCTTATTGACACGTTGCTATTATGTGAAAAATACCACTTTGATTAAATATACAGTTGGGATTTTACATGGATTTGTATTGCAAACCATGCTGGGATGTTGTCGTCACCCTTTTGCTTCATTGCATTCCCTGTGTGAATATGAGATATTGTCCAAAAATATGTATAGCA

Fln Alignment:

sp_v1.1_unigene15158___MANSSKILIIGGTGYIGRHISKASLALGHPTFLLVRETSASNPEKAKLLESFKASGAIILHGSLEDHASLVEAIKKVDVVISALKGPQLTDQQNIIKAIKEVGTIKRFLPSEFGNDVDRTHAVEPAKTMFATKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTTPPRDKVVISGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSLNELVALWEKKIGKSLEKTYIPEEEVLKKIAESPFPLNAIMSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVDEYLSQYV
A9NUA2_______________MANSSRILIIGGTGYIGRHISKASLALGHPTFLLVRESSASNSEKAKLLESFKASGAIILYGSLEDQASLVEAIKKVDVVISAVKGPQLTDQLNIIKAIKEVGTIKRFLPSEFGNDVDKTHAVEPAKTMFASKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTAPPRDKAVINGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSINELVALWEKKIGKTLEKTYIPEEEVLKKIAEAPFPLNAMLSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVEEFLSQYV

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
960		16		83	0.994512
1042		14		85	0.993533
1493		5		94	1.0
1543	97			2	0.946738
1545	81	1	8		1.0
1546	79	1	10		1.0
1547		80		19	1.0
1548		2	97		0.953846
1550	1		86		1.0
1551		10		89	1.0
1554	88	11			1.0
1555	8	12	78		1.0
1557			20	79	1.0
1558	79	10	10		1.0
1559		10		89	1.0
1560	10	10		79	1.0
1563	89		10		1.0
1564	79	10		10	1.0
1565		10	10	79	1.0
1566	11			88	1.0
1567		11	88		1.0
1570	88	11			1.0
1571			11	88	1.0
1580			88	11	1.0
1582	95		3	1	0.918242
1583			96	3	0.987242
1585	3			96	0.987242
1588		3	96		0.987242
1589		5		95	0.999992
1590	3	1	94		0.924724
1591	96		3		0.988113
1592			5	94	0.999993
1595	5			94	0.999993
1598	5	94			0.999993
1600		94	5		0.999994
1616	2	10	82		1.0
1618	6	91	2		0.999996
1619	4	35		55	1.0
1620	2	54		11	1.0
1625		83	16		0.999991
1626	18	81			0.999994
1631		90	10		0.90298
1633	90		10		0.90298
1640	90	10			0.90298
1643		11		88	0.923564
1645		88	11		0.923564
1647			22	77	0.999999
1648	88	11			0.923564
1649		22		66	0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain