SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15146

Length: 899 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15146

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L27a, putative; K02900 large subunit ribosomal protein L27Ae	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	94%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	94%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	94%
Blast2go	membrane	GO:0016020	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L15, conserved site	IPR001196	-	0.0	94%
Blast2go	Ribosomal protein L18e/L15P	IPR021131	-	0.0	94%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
470			97	2	0.930363
494		82		1	1.0
751	0	27		71	1.0
755	72			27	1.0
777		1		98	0.995218
811	2	2	1	94	0.915577
813	5	0		93	1.0
815	2			97	0.999597
816	2			97	0.999619
823	0	2		96	0.998075
824	72	28			1.0
830			25	74	1.0
847	4		2	93	0.983471
848	6			93	0.999999
849	6			93	0.999999
850	6			93	0.999999
872		11		88	0.999937
874	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain