SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15122

Length: 1542 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15122

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative; K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	92%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	92%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Blast2go	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	92%
Blast2go	Helicase, C-terminal	IPR001650	-	92%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	92%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: your sequence is shorter than subject: 347 - 593

Fln protein: VLAPTRELAVQIQQEAVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSSDLKANHAINQIVEVISEYEKYPKLIKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTRGGGSGGFGGGYRGRGRGRGGYGNRNVISGSNTIPLGNSAHRQW*

Protein Length: 348

Fln nts: AGTGTTAGCACCTACCCGTGAACTTGCGGTCCAGATTCAGCAGGAAGCAGTTAAATTTGGAACATCTTCAAAAATTAAGAGCACATGCATTTATGGAGGTGCTCCAAAAGGACCCCAAATTCGGGATCTCCAAAGAGGAGTTGAGATTGTTATTGCTACACCAGGCCGACTGATTGATATGCTGGAAGCGAGGCATACAAACTTACGCAGAGTGACATATCTTGTGTTAGATGAAGCTGATCGCATGCTAGACATGGGATTTGAACCGCAAATTAGAAAAATTGTAACTCAAATTCGCCCGGATAGGCAGACATTGTATTGGAGTGCTACTTGGCCAAGAGAAGTGGAAAATTTAGCAAGGCAGTTTTTGCATAATCCTTACAAGGTCATTATTGGATCTTCAGATTTGAAAGCTAACCATGCAATTAATCAGATTGTTGAGGTTATCTCGGAGTACGAGAAGTATCCCAAATTGATCAAGCTACTAGAAGAGATCATGGATGGAAGTCGGATTCTTATTTTCATGGAAACCAAGAAGGGATGTGATCAGGTTACCAAACAACTTCGCATGGATGGTTGGCCGGCATTATCCATCCACGGTGATAAAAGCCAGGCCGAAAGGGACTGGGTGTTGGGAGAGTTTAAGGCTGGCAAAAGCCCTATCATGACTGCTACGGATGTTGCTGCCCGTGGTTTGGATGTTAAGGATATAAAATGTGTCATTAACTATGACTTTCCTGGCTCACTGGAGGATTATGTACATCGTATTGGACGTACTGGTAGAGCTGGTGCAAAGGGTACAGCATATTCATTTTTTACTGCTGCAAATGGAAGATTTGCAAGGGAATTGGTTGGCATTCTTCAAGAAGCTGGGCAGCGTGTTAATCCTGAATTGGCTGCAATGACTCGCGGAGGTGGTAGTGGCGGTTTTGGAGGAGGATATCGTGGGCGTGGTCGCGGACGAGGAGGATATGGAAATCGTAATGTTATTTCAGGCTCAAACACTATTCCTCTTGGTAATTCTGCGCACAGGCAATGGTAG___AGTTAATACAATTGCGACTCTGTTAGGGAGGACATTCAAGAACAATCTGATATTTCTGTATCATAGTATTTTTGAAGACTCGTTGAAGCTATATCTTTTACCCATTTTAATTAGTTTAAACCGAGATATACACAATTTGGTTTTGATAGAGGTGAATTTCTACTTCGATTTTCTCAGTCCTCTCTTTTACATGGGTTGAGTGGTCGGTGATATGTCACACGTTGTCTAACCGAATCAAATCCAAGTCTTATGTGGCGCTTTGCCTCGTCATATTGTAAGAGACTGTGTTAGATGACAGTTGACAAAAATATGTCGTGCAACTGAATATTGGGGTTTGTCGATCATTATTTCCAAGCAGCTATGCCAACATGGTTCAGTGAAAGTTTCTTGTTTCACCTAAATGCAAGTCATCACTGGCATAGAGTGTTTAACATTGTAGTAATATAACGTCCGAAACATGTTAAATCTAAATATGTTAAATACCTTGTCACACTCTAAAC

Fln Alignment:

sp_v1.1_unigene15122___VLAPTRELAVQIQQEAVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSSDLKANHAINQIVEVISEYEKYPKLIKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIXXXXXXXXXXXXYSFFTAANGRFARELVGILQEAGQRVNPELAAMTXXXXXXXXXXXXXXXXXXXXXXXNRNVISGSNTIPLGNSAHRQW
C0PQ26_______________VLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTRGGGSGGFGGGYRGRGRGRGGYGNRSIISGSNTIPLGNSGHRQW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1066	11	88			0.923564
1067			88	11	0.923564
1068	88		11		0.923564
1069		88	11		0.923564
1070			11	88	0.923564
1429		12		87	0.999964
1539		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain