SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15121

Length: 1772 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15121

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Grave disease carrier protein, putative	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	90%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	90%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	90%
Blast2go	ATP transport	GO:0015867	Biological Process	90%
Blast2go	aerobic respiration	GO:0009060	Biological Process	90%
Blast2go	ADP transport	GO:0015866	Biological Process	90%
Blast2go	AMP transport	GO:0080121	Biological Process	90%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	90%
Blast2go	AMP transmembrane transporter activity	GO:0080122	Molecular Function	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	ADP transmembrane transporter activity	GO:0015217	Molecular Function	90%
Blast2go	ATP transmembrane transporter activity	GO:0005347	Molecular Function	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	90%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	90%
Blast2go	Mitochondrial carrier domain	IPR023395	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg:

Fln protein: MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGIRGLFKGNGTNCARIVPNSAVKFYSYEQASSAILWCYRRQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALATVLREEGPRALYKGWFPSVIGVIPYVGLNFSVYESLKDWLVKSRPFGLVEGEDLGVVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSVVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSISIAFVTYEVLKDLLDVQLKIKD*

Protein Length: 373

Fln nts: ATGGGGAAAGAAGAAAGGAATAAAACAAAAGGGAAGCCCTGGTGAGCGGCCGCGTGTATGGTTTCAATCCTTCCCGTGCGGAGGAGGGATCGATTCCACGACATTCAAGGAAGACAGAGAGGGCAGGCGAGAGTGGAGGAGGAGGTGGGGGCGATTTTTGAAGCCGCCGACGTTGGGTGGACGGGGGTGTATGTGCTTTTTAGGGTTGAGGGTTTTAGGGGCGAGTGAGTGAGGTTGTTTGGACTGGAATTGCAATTACAACTGTA_-_ATGGCTTCCGATGATGTAGTGGGAGGGAGCAACGCAGTCGCATTCCGCCAAACTCCTCCGCTCTATGCAGAAAGCAAAGAGGCCGCTGTCTCCACGTTAGTGAATCTAGCCGAGGAAGCAAAGTTAGCGAGCGAAGGCGTGAAGGCACCTGGACATGCTGTTCTTACTGTCTGTAAATCACTATTTGCTGGTGGCGTAGCAGGTGGAGTGTCTCGTACAGCTGTAGCCCCTTTAGAGCGACTTAAAATTCTACTTCAGGTTCAAAATCCTCTTCACCGCAAATACAATGGTACAATTCAAGGATTACGCTATATATGGAATACTGAAGGAATTCGTGGACTTTTTAAAGGAAATGGTACCAATTGTGCCAGGATAGTACCAAATTCTGCAGTAAAATTTTACAGCTATGAACAGGCTTCAAGTGCAATTCTCTGGTGTTATAGGCGACAGACAGGCAATGAAGATGCAGAGCTAACACCAGTTCTACGTTTAGGAGCAGGAGCATGTGCAGGAATAATTGCTATGTCTGCAACATATCCAATGGACATGGTTCGCGGAAGGTTAACTGTACAGACAGAAAACTCACCTTATCAGTACCGTGGAATGTTCCATGCATTGGCAACTGTCTTGCGTGAGGAAGGTCCAAGAGCTTTATACAAAGGCTGGTTTCCTTCTGTGATTGGAGTGATTCCATATGTCGGGCTGAATTTCTCAGTTTACGAGTCTCTGAAGGACTGGTTAGTCAAATCCAGACCCTTCGGTCTTGTTGAGGGGGAAGATTTGGGCGTGGTCACTAAATTGGCTTGTGGAGCTGCAGCAGGAACTGTTGGACAAACTGTAGCTTATCCTCTTGATGTAATACGGAGAAGAATGCAAATGGTTGGGTGGAAAGATGCTTCTTCTGTTGTAACTGGAGATGGGAGAAGCAAAGCTCCACTTCAATACTCTGGTATGGTTGATGCTTTCAGACAAACTGTAAGGAATGAAGGTTTTGGTGCATTGTATAGGGGTTTGGTTCCGAATTCAGTGAAGGTGGTGCCGTCAATATCAATTGCTTTTGTGACATATGAAGTTCTGAAGGATCTTCTGGATGTGCAATTGAAAATTAAAGATTAA___AGAAATTTTATTTTCATGTGGTGATATTTGGAGAGCGTTCTTTGATTTATTCCAAGGAATAAACGATCTTCATTATTGTTTATTTGTGTAAAATGGGGCCGTTATTTTTATTAATGGCTGTATCTATATCTTTGAAGGCATATCCGATCATTAGATTGTAGAAGTTTAAAATCCCCAAAGATCAATAAATCTTGTAATTGAGACATTGGAGTTAGCACATTCCAGCAGTTTTGCTTTGCCGAGGAAACATATATTTAAAATTTTAGTGTTTTTATGGTTATATAATCAATATCGCCTCCCAGGCGTTGTGTTTACAGAGGGGATTCGAAATTGTTGTGTTGCCTTGGTCCTGTTTTTTGTGCTAAGATATTCAAGTTCCCTGTTTGCTAG

Fln Alignment:

sp_v1.1_unigene15121___MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGIRGLFKGNGTNCARIVPNSAVKFYSYEQASSAILWCYRRQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALATVLREEGPRALYKGWFPSVIGVIPYVGLNFSVYESLKDWLVKSRPFGLVEGEDLGVVTKLXXXXXXXXXXXXXXYPLDVIRRRMQMVGWKDASSVVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSISIAFVTYEVLKDLLDVQLKIKD
D5ADX1_______________MASDDVVGGSNTVAFRQTPPLYAESKEAAVSTFVNLAEEAKLASEGVKAPGHAVLTICKSLFAGGVAGGVSRSAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGLRGLFKGNGTNCARIVPNSAVKFYSYEQASRAILWFYRQQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALSTVLREEGPRALYKGWFPSVIGVVPYVGLNFAVYESLKDWLVKSRPFGLVEGEDLSMVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSIVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSIAIAFVTYEALRDLLNVELRISD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
434		95		4	0.997218
610		20		80	0.999996
611			20	80	0.999996
612		20		80	0.999996
614	80		20		0.999996
615	80			20	0.999996
618	80			20	0.999996
619	80		20		0.999996
621		15		84	0.999986
622	15		84		0.999986
625	84		15		0.999986
656		90		10	0.90298
699	60	40			1.0
1018	87		12		0.992554
1695		11		88	0.923564
1696		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain