SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15120

Length: 1892 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15120

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	serine-threonine kinase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	signal transduction	GO:0007165	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	80%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	80%
Blast2go	NAF domain	IPR004041	-	80%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	80%
Blast2go	Protein kinase-like domain	IPR011009	-	80%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	80%
Blast2go	NAF/FISL domain	IPR018451	-	80%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg:

Fln protein: MDPKPNILMGRYELGRLLGKGTFAKVYYARNLKTGESVAIKAMDKEKILKVGMIDQIKREVSIMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEHFRKDGLLHTACGTPAYVAPEVITKKGYDGAMADIWSCGVILFVLMAGYLPFQDANRIIMYKKIHKGDYKCPPWFSSEVRRLVHRLLDPNPRTRITVPQLMEVPWFRRDFKRPQTDRDVTVDLLDDVDSAFFVPKPACLNAFDIISLSPGFNLSGLFKDNAMKQEEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDFKMKLQGSEQGRKGHLSIDAEIFEVTPSFFMVEIRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNSQEK*

Protein Length: 432

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCTGGAGTTCTCCTGTACACTTTACTTGGAGTTCATTGATCCGGCCCTGTGCTTTTCCCCATTAAAGTTATATTCACAGGAAAGCTTGAACATACGCTTTGTTGAAGTATACACACAGATTCACTGTGTATATACAGAGAATGCAGTAAGATGCCCTTGCAGGATGTCTATGCTACTAGTCGCGGAGGTCCAGAACAGATCGCGTTCAAAGAGCAGAGGCAGAAGATAAGCAGAAACACTCAGAGATCTTGGAATGGAGTGGATATCGGAGAGCAAGGTCTTGGATTAGAAATTGCACAGAGAGGGGGTTGAATAAGGGCATAGCTTTAACCCACACGAGTTTGTGGTGCAGAG_-_ATGGATCCGAAGCCAAATATTCTGATGGGGAGGTACGAATTAGGGCGCCTTCTGGGGAAAGGGACTTTCGCCAAGGTCTACTACGCCAGAAATCTGAAGACAGGGGAAAGTGTGGCCATTAAAGCTATGGACAAGGAAAAAATCCTCAAGGTGGGCATGATCGACCAAATTAAACGGGAAGTCTCGATTATGAGACTGGTCCGACACCCTAACATCGTCAGGCTCTACGAAGTCATGGCGAGCAAGACCAAGATTTACTTTGTGATGGAGTACGTTAAGGGCGGCGAGCTCTTCAACAGGGTTGCAGACAAAGGGAAACTGAAGGAGGAGGAGGCGAGGAAGTATTTTCAGCAACTGATTAGCGCGGTGGATTTCTGCCACAGCCGCGGAGTGTACCACCGGGACTTGAAGCCGGAAAACTTGTTATTAGACGACAACGGGAATGTTAAGGTCTCCGACTTCGGGCTGAGCGCACTGCCGGAGCACTTCAGGAAGGACGGCCTTCTGCACACAGCATGCGGCACACCAGCCTATGTCGCACCCGAGGTCATCACCAAGAAGGGGTATGACGGTGCCATGGCAGACATTTGGTCATGCGGAGTCATACTGTTCGTGCTCATGGCGGGCTACTTGCCGTTCCAGGACGCGAATCGGATCATCATGTATAAGAAGATCCACAAGGGAGACTACAAATGCCCGCCCTGGTTTTCCTCCGAAGTCCGCCGGCTCGTCCACCGGTTGCTAGACCCTAACCCCCGGACGAGGATCACCGTTCCGCAGCTGATGGAGGTCCCCTGGTTCCGCCGGGACTTCAAGCGCCCGCAGACCGATAGAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCGGCGTTTTTCGTGCCGAAGCCGGCCTGCCTGAACGCCTTCGACATAATCTCCCTCTCGCCGGGGTTCAATCTCTCCGGGCTCTTCAAGGACAATGCCATGAAGCAGGAGGAGGAATCGAGGTTCACATCGACTCAGCCGGCGTCGAGCATAATGTCGAAGCTGGAGGAGATTGCAAGCCTGTTCCGGTTCAGCTTCAAGAAGTCCAAGGACTTCAAGATGAAGTTGCAGGGGTCGGAGCAGGGGCGTAAGGGGCACCTGTCTATTGATGCTGAGATTTTTGAGGTCACTCCCTCGTTTTTCATGGTAGAGATTCGGAAAACCGGCGGGGATACACTGGAGTACAGTAAGTTCTGCAGCCAAGATCTGAGGCCCGGACTCAAAGACATTGTGTGGACATGGGACGGCAATAGTCAGGAGAAATAA___TAACATCAATTTCCATGATCTGATTTGTATCATTGGCATGTTATGTATCTGAGAAAGCAGTGTAGCCAGAATAGAATACTTCTTTCTCCTATCGGGAAGGACTGCTAGCCATGAAACCTTCACAGTATCGAAGCTAAGTGTCAGATGTACAGCTTATTTTCTTGTAAATTTGTTAAAACAGATGAAATGTTTTACATTTAA

Fln Alignment:

sp_v1.1_unigene15120___MDPKPNILMGRYELGRLLGKGTFAKVYYARNLKTGESVAIKAMDKEKILKVGMIDQIKREVSIMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEHFRKDGLLHTACGTPAYVAPEVITKKGYDGAMADIWSCGVILFVLMAGYLPFQDANRIIMYKKIHKGDYKCPPWFSSEVRRLVHRLLDPNPRTRITVPQLMEVPWFRRDFKRPQXXXXXXXXXXXXXXSAFFVPKPACLNAFDIISLSPGFNLSGLFKDNAMKQEEESRFTSTQPASSIMSKLEEIAXXXXXXXXXXXXXXXXLQGSEQGRKGHLSIDAEIFEVTPSFFMVEIRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNSQEK
D5A9K4_______________MEMKSNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKVMAKEKILKVGMIEQIKREVSVMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGVVKVSDFGLSALPEQFRQDGLLHTACGTPAYVAPEVITKKGYDGATADIWSCGVILFVLMAGYLPFQDANLMVMYKKIYKGDYKCPPWFSSEVRRLVLRLLDPNPRTRITVPQLMEVPWFRRGFKRPQADKDVNVGVLDDVDSAFFVPKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDFKMKLQGSEQGRKGHLSIDAEIFEVTPSFFMVELRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNRQEK

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
370	85		14		0.993533
374			20	80	0.995493
376	80	20			0.995493
379		83		16	0.994512
384		71	14	14	0.984337
386	71	14	14		0.984337
389	14			85	0.993533
390	14			85	0.993533
518		60		40	1.0
548		40		60	1.0
690	14	85			0.993533
692		85	14		0.993533
693			14	85	0.993533
694			14	85	0.993533
720		50		50	1.0
731			83	16	0.994512
736		83		16	0.994512
740		16	83		0.994512
742	83		16		0.994512
743		16	83		0.994512
744		16		83	0.994512
746	16			83	0.994512
747			16	83	0.994512
748			16	83	0.994512
754	90		10		0.90298
761			11	88	0.923564
764		88		11	0.923564
767	11		88		0.923564
769		11		88	0.923564
770		11	88		0.923564
771	11		88		0.923564
773			11	88	0.923564
774			11	88	0.923564
778	11		88		0.923564
780		88	11		0.923564
990		14		85	0.993533
1034			71	28	1.0
1035		71	28		1.0
1036	28	71			1.0
1039			28	71	1.0
1040	28	71			1.0
1045	71	28			1.0
1047	28		71		1.0
1048	28	71			1.0
1051	71		28		1.0
1055		28		71	1.0
1058		28		71	1.0
1095	66		33		0.997452
1155		33		33	0.997753
1205	66		33		0.997452
1206	66	33			0.997452
1209	33		66		0.997452
1574		11		88	0.923564
1752	12		87		0.992554
1789			85	14	0.993533
1811	85		14		0.993533
1824		85	14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
721	732	AGG AGG AGG AGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain