SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15104

Length: 1981 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15104
CGATGCGGTGGCGCACAATTGACAAACAATCCTCCAAAATTCAATAGATGTAACAAAATTTGCTGCTGTTCTGCAGGTAATGAATGAATCAATCACGCCAGCAATAAAGAAGGGTAGGTCAGGCCACAAGTCAGGACAACTAATGTCCCAACAAACTAACCCCTGTTCTGGGGTCTTGGTATGGGTGAGAGAAGGGACGTTGGATTGTGCAACTACCAGCCCCTCATACCGAACCTTAAGCCAAATTGAATGAACTACTGCATTCCTCACCGGTCCTTCTTTAAGCCTCCCACCTGCACCTACGACACGCATTAAACATGCCGACGATCCCCAACTCATTCCTAATTGTTCGATCCTACCTTTTAAAGCCCCTCCCTGGCCTTCATTCCAGGTCACAGAGTTGTTCATGCAGTGCTAGGAGGAGGAGCAGCGTTGCAATTGGGGAAAATTTCAAAATCAAGAACAAGAGGACAGAAGTAAGTTTGTGGAAATAGCAACCATGCCGGTGTTTCCTTCTGGTCTGTACCCCTCTGAGGGCAATGGCAAGGTCGTTTGTGTCATGGATGCGTCCAGTTATGTAGGTTTGTGGATTGTTCAGGGCCTTCTGCAACGAGGCTATTCAGTGCATGCCACTGTGCAGAGAGACGCTGGCGAGGTTGAGTCTCTCAGAAAATTGCAGGGGGATCGATTGCAGATCTTCTATGCAGATGTCTTGGATTATCACAGCATTACCGATGCGCTCAAGGGCTGTTCTGGTCTGTTTTATACCTTTGAGCACCCTCAGAGTGCTGCAGGCTATGATGAAGTGATGGCAGAAATTGAAGTACAAGCAGCCCACAATGCACTGGAAGCGTGTGCTCAGACTGAGACCATTGAGAAAGTTGTGTTCACTTCTTCTGTGGCTGCAGCAATTTGGAGAGAAGATGGAGACTACAAGGTTAATGCCCTTGACGAGAGGCATTGGAGTGATGCAAATCTTTGCAGGAAATTGAAGTTGTGGTACGCATTAGCCAAGACACTGTCAGAGAAGGCTGCATGGGCGCTGGCAATGGACAGAGGGTTGAATATGGTGACAATCAACGCATCTCTGATTGTAGGACCTGGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATGTATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTCAGTAAGGCAGAGGATGCTGTCAATTTAGCACAGAGCTTGCGTCACCTGATACCGTTCCCTGATAGATTTGAAGACTCAACGGTCTACCAACAGCGTCTGAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCCTAAGCAGCTAACTGTAAGGGACGGGGGGCGGCTTTTCCCCATGTTTACAGCTCATCAGCAGCCATGAATGAGGGGCACAAGAAAACTTGGGGAGATTACATGTTCAGACTACATGCATTATTGTACATCATGTAATATAATTTTCCCTTTTAGGTTCGTTGGAATGTTGGCAATAAGTCGATTTTCTTCACCAGGAGCATTAAAAGTCTCAATCTTCATTTGATAGCTGGCAACAGCTCTAAGTCGATTTCCATAACGACCAGCAATGAAGTTTTAGCCTGTCACTAAGGCTTTCAACCATGCGCATTTTTTTGTTGTTAATCGCTGAAGTAAAATCTATTTCCTGATTTCTTGCAAAAAGTGCAAGCAAACTTTGTTGATGGGCTGTTTGGTGTGTGAATAAAAAGTGCTATACCCCACATTCTGGAATTGTTTTATCATTATGAAAGTTCCTCCTGTTTGTTTTACCATTATGGGCAGTTACACTTTTCCTTAACACAGCTTGCACTCTCCCTTATCATGAACTGTGTTATGAATGAATGGAATGTGTAATG

Ace file of the UniGene sp_v1.1_unigene15104

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cinnamoyl-CoA reductase (EC:1.2.1.44)	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Phenylpropanoid biosynthesis	00940	71%
Blast2go	Biosynthesis of phenylpropanoids	01061	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	Identity
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	71%
Blast2go	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	71%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL44

Fln msg:

Fln protein: MPVFPSGLYPSEGNGKVVCVMDASSYVGLWIVQGLLQRGYSVHATVQRDAGEVESLRKLQGDRLQIFYADVLDYHSITDALKGCSGLFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGDYKVNALDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRATLSS*

Protein Length: 314

Fln nts: CGATGCGGTGGCGCACAATTGACAAACAATCCTCCAAAATTCAATAGATGTAACAAAATTTGCTGCTGTTCTGCAGGTAATGAATGAATCAATCACGCCAGCAATAAAGAAGGGTAGGTCAGGCCACAAGTCAGGACAACTAATGTCCCAACAAACTAACCCCTGTTCTGGGGTCTTGGTATGGGTGAGAGAAGGGACGTTGGATTGTGCAACTACCAGCCCCTCATACCGAACCTTAAGCCAAATTGAATGAACTACTGCATTCCTCACCGGTCCTTCTTTAAGCCTCCCACCTGCACCTACGACACGCATTAAACATGCCGACGATCCCCAACTCATTCCTAATTGTTCGATCCTACCTTTTAAAGCCCCTCCCTGGCCTTCATTCCAGGTCACAGAGTTGTTCATGCAGTGCTAGGAGGAGGAGCAGCGTTGCAATTGGGGAAAATTTCAAAATCAAGAACAAGAGGACAGAAGTAAGTTTGTGGAAATAGCAACC_-_ATGCCGGTGTTTCCTTCTGGTCTGTACCCCTCTGAGGGCAATGGCAAGGTCGTTTGTGTCATGGATGCGTCCAGTTATGTAGGTTTGTGGATTGTTCAGGGCCTTCTGCAACGAGGCTATTCAGTGCATGCCACTGTGCAGAGAGACGCTGGCGAGGTTGAGTCTCTCAGAAAATTGCAGGGGGATCGATTGCAGATCTTCTATGCAGATGTCTTGGATTATCACAGCATTACCGATGCGCTCAAGGGCTGTTCTGGTCTGTTTTATACCTTTGAGCACCCTCAGAGTGCTGCAGGCTATGATGAAGTGATGGCAGAAATTGAAGTACAAGCAGCCCACAATGCACTGGAAGCGTGTGCTCAGACTGAGACCATTGAGAAAGTTGTGTTCACTTCTTCTGTGGCTGCAGCAATTTGGAGAGAAGATGGAGACTACAAGGTTAATGCCCTTGACGAGAGGCATTGGAGTGATGCAAATCTTTGCAGGAAATTGAAGTTGTGGTACGCATTAGCCAAGACACTGTCAGAGAAGGCTGCATGGGCGCTGGCAATGGACAGAGGGTTGAATATGGTGACAATCAACGCATCTCTGATTGTAGGACCTGGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATGTATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTCAGTAAGGCAGAGGATGCTGTCAATTTAGCACAGAGCTTGCGTCACCTGATACCGTTCCCTGATAGATTTGAAGACTCAACGGTCTACCAACAGCGTCTGAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCCTAAGCAGCTAA___CTGTAAGGGACGGGGGGCGGCTTTTCCCCATGTTTACAGCTCATCAGCAGCCATGAATGAGGGGCACAAGAAAACTTGGGGAGATTACATGTTCAGACTACATGCATTATTGTACATCATGTAATATAATTTTCCCTTTTAGGTTCGTTGGAATGTTGGCAATAAGTCGATTTTCTTCACCAGGAGCATTAAAAGTCTCAATCTTCATTTGATAGCTGGCAACAGCTCTAAGTCGATTTCCATAACGACCAGCAATGAAGTTTTAGCCTGTCACTAAGGCTTTCAACCATGCGCATTTTTTTGTTGTTAATCGCTGAAGTAAAATCTATTTCCTGATTTCTTGCAAAAAGTGCAAGCAAACTTTGTTGATGGGCTGTTTGGTGTGTGAATAAAAAGTGCTATACCCCACATTCTGGAATTGTTTTATCATTATGAAAGTTCCTCCTGTTTGTTTTACCATTATGGGCAGTTACACTTTTCCTTAACACAGCTTGCACTCTCCCTTATCATGAACTGTGTTATGAATGAATGGAATGTGTAATG

Fln Alignment:

sp_v1.1_unigene15104___MPVFPSGLYPSEGNGKVVCVMDASSYVGLWIVQGLLQRGYSVHATVQRDAGEVESLRKLQGDRLQIFYADVLDYHSITDALKGCSGLFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGDYKVNALDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRA
A9NL44_______________MPVFPPGLDASEGNGKVVCVMDASSYVGSWIVQGLLQRGYSVHATVQRDAGEVESLRKLHENRLQIFYADVLDYHSITDALKGCSALFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGEYKVNAIDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLSSVDIRFLADAHICAYEDPSAYGRYICFNQIVSNAEDVANLAQSLRHLVPFPDRFEDSTVHQQRLSNKKLTGLMVGFGNRA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1787	87	3			1.0
1848	4	80	14		1.0
1851	10	85	5		0.999793
1855	33	66			1.0
1856	33			66	1.0
1857	44		55		1.0
1858	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain