SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15102

Length: 1536 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15102

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Senescence-associated protein n=1 Tax=Elaeis guineensis RepID=B3TLS7_ELAGV	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	senescence-associated protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	aging	GO:0007568	Biological Process	81%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Tetraspanin, subgroup	IPR000301	-	81%
Blast2go	Tetraspanin	IPR018499	-	81%
Blast2go	Tetraspanin, conserved site	IPR018503	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRM9

Fln msg:

Fln protein: MVRFSNNVIGILNFITFVLSIPILGAGIWLANRASTDCEKFLEKPVIAIGVFLMLVSIAGLIGACCRVSWLLWVYLLAMFLLILLLFCFTVFAFVVTNKGVGEVVSNRGYKEYRLGDYSHWLQKRVDNTANWKKIRSCIMDAKVCQSLADDSKSKVAATFFQENLSPIQSGCCKPPTSCGFTYVSPIDWTGTPNTTSDVDCSTWSNNSTQLCYDCNSCKAGVLANLKHDWRKVAVVNIVMLIFLIIVYSVGCCAFRNNRSDNSYGKGYL*

Protein Length: 271

Fln nts: ATGGGGTGGTATCGTCGCGACGTGACATGGGGAGGAATTAACTCTCCGATCTTGATTTTGAGGTCATAGGATCGAGTCGTATAAGCGTCAAGAGGTAGTAGGGAGGTAGTAGTATCTTGATCCTCGTCTCTGCTTTACTTTTCACAGGATCGAACCGCAGTGAGTAACTTCGGAAGTGTGTTCTTCTACCTTTGCATTCGTTCTGCCTCGGATCTGTTCTTGGAAAA_-_ATGGTTCGTTTCAGCAACAATGTAATCGGAATCCTTAACTTCATCACGTTTGTGCTGTCGATCCCGATTCTGGGAGCCGGGATATGGCTGGCCAACCGTGCAAGCACCGACTGTGAGAAGTTTCTTGAAAAGCCGGTGATTGCTATCGGGGTTTTCCTCATGCTGGTCTCCATCGCTGGCCTGATAGGGGCCTGCTGCAGGGTCTCATGGCTGCTGTGGGTGTATCTTTTGGCCATGTTCTTGCTTATACTTCTGCTCTTTTGCTTCACGGTCTTTGCGTTCGTGGTGACCAACAAGGGCGTGGGGGAAGTGGTTTCGAACCGGGGATACAAAGAATACCGACTGGGAGACTATTCTCACTGGCTTCAGAAGCGCGTTGACAATACTGCCAACTGGAAAAAGATCAGGAGCTGCATTATGGATGCCAAGGTCTGCCAAAGCCTTGCAGACGACAGCAAGAGCAAGGTCGCAGCTACTTTCTTCCAGGAAAATTTATCACCTATCCAGTCGGGCTGCTGCAAACCCCCTACCTCGTGCGGCTTCACCTATGTGAGCCCGATTGACTGGACCGGTACCCCGAACACCACGTCTGATGTTGACTGTAGCACTTGGAGCAACAACTCGACCCAGTTGTGCTATGACTGCAACTCATGCAAGGCCGGGGTTCTTGCAAACCTGAAGCACGACTGGCGAAAGGTGGCGGTTGTGAATATAGTGATGCTTATCTTCCTCATCATCGTCTACAGCGTCGGCTGCTGCGCCTTCAGGAACAATAGGAGCGATAACAGTTATGGGAAGGGCTATCTCTAA___AATAGCATATCTTTTTTTCATAGACAGGGGCACAGACAGAGACACAGAAGATCATTTCATGTTTAGATCGGATTTTCCTGTATAGTAGCTATTTTTTCATTTGTGTTGTTATTATTATAGTTTATGATGAGCATACGGGAGATGTACTGTCCCAATCTTCAGACATTTAATTAGAGACACTGATACTGCCCCAATATTCAGAAATCTAATTAGTCCAGTGATGGTTTTACTGGTTTTCGTATAAAAATTCGCTTTGAACAGTTGGAAATGTGCCCTTCATTTTTTTTCTCTCTCAGATGTTTCATTTTGAAACCAAGATCCTAGTTTATTAGGAGGGTAACAACTTACCAACCGGTTTAACTACACCCAATTTACATAATATTTTTTCCTTTCTTTATGTAATTCACTGGAACAATTCAAAGTTTGTGGAaAGTTCCAATAAAATGAACTGTCCCGGACACCTTCCTcTGATTtTGAAGATTGTTTCCCCTTTTCAAAA

Fln Alignment:

sp_v1.1_unigene15102___MVRFSNNVIGILNFITFVLSIPILGAGIWLANRASTDCEKFLEKPVIAIGVFLMLVSIAGLIGACCRVSWLLWVYXXXXXXXXXXXXXXXXXAFVVTNKGVGEVVSNRGYKEYRLGDYSHWLQKRVDNTANWKKIRSCIMDAKVCQSLADDSKSKVAATFFQENLSPIQSGCCKPPTSCGFTYVSPIDWTGTPNTTSDVDCSTWSNNSTQLCYDCNSCKAGVLANLKHDWRKVAVVNIVMLIFLIIVYSVGCCAFRNNRSDNSYGKGY
A9NRM9_______________MVRFSNNVIGILNFITFVLSIPILGGGIWLANRASTDCEKFLEKPVIAIGVFLMVVSIAGLIGACCRVSWLLWVYLLAMFLLIVLLFCFTVFAFVVTNKGVGEVVSNRGYKEYRLGDYSNWLQKRVENTANWKRIRSCIIDAKVCKSLADESVNKAADAFYKENLSPIQSGCCKPPTSCGFTYVSPIMWNGTATDTSNTDCNSWNNTQSQLCYDCNSCKAGVLQNLKHDWRKVAAVNIVMLIFLVIVYSVGCCAFRNNRHDNSYGKGY

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1186		96		3	0.999962
1195		13		85	1.0
1201			81	18	1.0
1219	2	97			0.972772
1234		17		82	1.0
1282	87		12		0.992554
1295			66	33	0.997452
1307	66			33	0.997452
1387		50	50		1.0
1469	66		33		0.997452
1470	33	66			0.997452
1471	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain