SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15101

Length: 1384 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15101

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NP38_PICSI	-	-	99%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	proteasome subunit alpha	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	93%
Blast2go	copper ion transport	GO:0006825	Biological Process	93%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	93%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	93%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	93%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	93%
Blast2go	proteasome core complex, alpha-subunit complex	GO:0019773	Cellular Component	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	93%
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	93%
Blast2go	Proteasome A-type subunit	IPR023332	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP38

Fln msg:

Fln protein: MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD*

Protein Length: 248

Fln nts: ATGGGGTCGGTCCCCTCTTCAAAAGCAGGTGACCGTAACCGTAACTATGGGGGTCCGCTGACATTCTACTTTAGCTTTAACTTTGGCGTAGGGAAGAAGAAAACAAAAGCCCTTGCTCTCGACACTGCATTTTTCCTGCACTTAGGGTTTGAGATCTGAACTACGAGGATTTACCTGATATTTTCAGA_-_ATGAGTCGCGGTACCGGAGCTGGATACGATCGTCACATCACAATATTTTCACCAGAAGGTCGACTGTACCAAGTCGAATATGCTTTCAAAGCAGTGAAGGCCGCGGGAATCACATCCATAGGTGTGCGCGGGAAGGATTCGATTTGCGTCGTTACACAGAAAAAAGTGCCAGACAAGTTACTTGATCAGACTAGTGTGACCCATCTTTTTCCAATTACAAAATTCATTGGGTTATTAGCAACTGGCATGACTGCTGATGCAAGGTCATTAGTTCAGCATGCACGGAATGAGGCAGCAGAGTTCCGTTTCAAATGGGGTTATGAAATGCCTGTAGACGTGCTAGCTAGAAGGCTTGCAGATAAGTCTCAAGTTTATACACAACATGCATACATGAGACCACTTGGAGTAGCTGCTATAGTACTTGGTATTGATGAAGAGTCTGGACCTCAACTATTCAAATGTGATCCGGCTGGTCATTTTGTTGGTTATAAGGCAACTGCTGCTGGTGTCAAGGAGTCAGAGGCAGTCAGTTTTCTGGAGAAGAAATTGAAGAATAATCCAGAGTTATCTTATGAGGAAACTGTACAGACAGCAGTCTCTGCACTCCAATCTGTTCTTCAGGAGGATTTTAAGGCTACAGAAATTGAGGTCGGTGTTGTTACAAAAGAAAGTCCAGTATTTCGTACTTTATCAACAGAAGAGATTGATGAACATCTGACAGCGATCAGTGAGCGGGACTAA___ATATCTGAAGTTGAGAAAAGTTCTCTAAATCTGCAGTTCCTTTTTATTGTTGATTCTGCTAGTGCAGCAGAAGAAAATCTCTGAATGAAGAGAGAATGTTAATGAAATGCCAGTCCCATGAGTTTGGGTATATTCTATGGGTTTACATCTGGAATGGTTGGTGCAATTATTATTTGAACGCTTGAAAACATGAATTTTAGAATACATCAAGTTTCAAATAACTTTTTTCTCATTTATCAAATTATTTTTGTAATGGCAATGATAAACTTCAACTGTTTTCCCGTGATCAAATTGAGTATGTAACTAGAGTTCTCTATCAGGAAATTGGCATCCTCAGTATCCAATAATTAATTTGCTCAGAGAGTATCATGTTTAGAGTTTGAATAGTGTCATTCACCTTTAATGTCAGGCAGTGTCAAGAAAATGAATTAGAAACGGCCCAGAATTCTACCTTT

Fln Alignment:

sp_v1.1_unigene15101___MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD
A9NP38_______________MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKDSPVFRTLSTDEIDEHLTAISERD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
623		12		87	0.992554
1143	21	78			1.0
1213	10			90	0.90298
1214	10			90	0.90298
1215	10	90			0.90298
1216	10	90			0.90298
1256	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain