SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15092

Length: 2431 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15092
ATGGGACGTATTTTCGGATTCCCCTTTCTAACCCATGCGGCGACTCGCAGGGTTTCGGCGATGAACAATTTCCGGACAGGAAGTACACGTGGGCTGGCGGTGGTAGTTTTCGATATGGAATCTCCGCCGTTCATCTGGACCTACTTGCTATACAAAAGGCGTCGTGACCTTGGCTGTCACTCAATCCTCATTTTTCGTCTACCGTTAATTTCGTCTGGAGGTCAGAGATATTTATTTATTCTGATTTTCAAATGGCTACCTTTGCTGCTGCATCAGCCAAGCCCATGGCTGTCATCGATAACTCTCAGTTGAATCTATCTCAGAAGAAGTTTGATGGTCTTCGGATTGGCCACGCGTTCGCCAAGAGGAAAGACAGTTCCTCTTTGAAAGTCAAGGCTGTGAGCAGAATTAACATGACTATTGCAACAGATGTCTCTCGCTTTGAAGGAGTGACAATGGCACCTCCAGATCCAATTCTGGGTGTTTCAGAAGCATTCAAAGCAGATACAAGTGATTTGAAGCTTAATCTTGGTGTTGGAGCTTACAGAACAGAAGAACTTCAACCCTATGTGCTCAATGTGGTGAAAAAGGCAGAGAATCTGATGTTGGAAAAGGGAGACAATAAAGAGTATCTCCCTATTGAAGGTTTGGCAGCTTTTAATAAGGCTACTGTGGAATTGTTGCTGGGAGCTGACAATAATGCAACCAAGCAAGGACGGGTGGCTACTGTCCAAGGCCTTTCAGGAACTGGTTCTCTTCGCCTCGCTGCTGCCTTTATTCAAAGATATTTCCCTGGAGCACAAGTCTTGATTTCTTCTCCAACTTGGGGGAATCACAAGAATATTTTCAATGATGCTGGGGTTCCATGGTCGGAATACCGGTACTATGATCCTAAAACTGTAGGACTAGATTTTGAAGGGATGATTGCAGACATTAAGGCTGCACCAAGTGGTTCTTTTGTGCTGCTTCATGGTTGTGCTCACAATCCAACTGGAATTGATCCAACTCCTGAGCAGTGGGAGAAGATTGCTGATGTCATTCAGGAAAAGAATCTTACTGCTTTCTTTGATGTTGCTTATCAGGGATTTGCAAGTGGCAGTCTTGATCAGGATGCATCATCTGTGAGGTTGTTTGTAGCTCGTGGGATGGAAGTTTTTGTTGCTCAGTCCTACAGCAAGAACTTGGGTCTTTATGCAGAACGGATAGGAGCTATCAATGTTGTGTGCTCCTCATCAGATGCAGCAACTAGGGTGAAGAGCCAGCTTAAAAGGCTTGCTAGACCAATGTACTCAAATCCTCCAGTTCATGGGGCTCGAATTGTGGCAAATGTTGTTGGTGATCCTACTCTGTTTAAAGAATGGAAGTCAGAAATGGAACTTATGTCTGGAAGAATTAAGGGTGTGAGGCAGCGACTCTATGATAATCTGTCTGCAAAGGATAAGAGTGGGAAAGACTGGTCCTTTGTTCTTAGACAAATTGGCATGTTTTCCTTCACGGGCCTTAACAAAGCTCAGAGTGATAATATGACAAATAAGTGGCATGTCTACATGACAAAGGATGGGCGTATTTCCTTGGCTGGCCTGTCGCTGTCCAAATGCGAGTACCTTGCAGATGCCATATTTGACTCCTACTATAATGTCAGCTAAACAACAGGATTATATCAAAATCTAATATCAATTTTCTATGCTAGAAATATTACTAATTTTGAAGCACCTGACATCACATTGGGTGTTGATGTCTGAGGCATTCTTATCAGTCTGCATTCTACAAAATTTTGGCTGCTTACTGATCTTTCATTGTTCATCTTGTTAAATAAAGGTCTGACATTGGATGCCACCTGTTTGGCCGGAAGACCATAGCGTATTTTTCAAGCAGATTCTGCATTCTGCAGTTTCTGTCCTATTTTTCTAGAGAAGATAACATTTAAAGTTAGTAAAATATAAGCTCGGTTTTTGAAATCTAGGGATATTGCTGTTTAATTGTCTTCTATATTAAGGGATTTGAATAACTTTTGTAGTCCAGTGCCCAATTTCTGTAATGTCAGATGGAAAATTGTATCAGGTCTTAGCATATCTTGCACGTGATGTCATTGGTAGTTATTAGCACTTCTGCAGCTATATGCCGGAATTGACATAAATAGATTCAGTTCTGATAATCTGACTACAGAGCACTCTTGTCGGAAGATTCAATGCATTGTATGAGTGGTACTGCTAGCATATTGAGTTACATTTTGGAAATCATTGCGGCTTTGTTTGTTTCCCGGCCCCACAAATGAGAGTTGTGTTAGATTGAAATATTCCGGAAGGCTAAGACATCAAGTCTTGTAAACTGCATGAACAATCTGTAGGGTTCCAATACTTCTAAATAATTTAATTTATGCTGTTTGATTAACCGTATTCGCCTCATAACATGATTGTCTTAGTGGAGCTTG

Ace file of the UniGene sp_v1.1_unigene15092 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=3 Tax=Picea sitchensis RepID=A9NVA2_PICSI	-	-	94%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aspartate aminotransferase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Cysteine and methionine metabolism	00270	91%
Blast2go	Arginine and proline metabolism	00330	91%
Blast2go	Tyrosine metabolism	00350	91%
Blast2go	Phenylalanine metabolism	00360	91%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	91%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	91%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	biosynthetic process	GO:0009058	Biological Process	91%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	91%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	91%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	91%
Blast2go	stromule	GO:0010319	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Aspartate/other aminotransferase	IPR000796	-	91%
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	91%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVA2

Fln msg:

Fln protein: MATFAAASAKPMAVIDNSQLNLSQKKFDGLRIGHAFAKRKDSSSLKVKAVSRINMTIATDVSRFEGVTMAPPDPILGVSEAFKADTSDLKLNLGVGAYRTEELQPYVLNVVKKAENLMLEKGDNKEYLPIEGLAAFNKATVELLLGADNNATKQGRVATVQGLSGTGSLRLAAAFIQRYFPGAQVLISSPTWGNHKNIFNDAGVPWSEYRYYDPKTVGLDFEGMIADIKAAPSGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNLTAFFDVAYQGFASGSLDQDASSVRLFVARGMEVFVAQSYSKNLGLYAERIGAINVVCSSSDAATRVKSQLKRLARPMYSNPPVHGARIVANVVGDPTLFKEWKSEMELMSGRIKGVRQRLYDNLSAKDKSGKDWSFVLRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLSKCEYLADAIFDSYYNVS*

Protein Length: 466

Fln nts: ATGGGACGTATTTTCGGATTCCCCTTTCTAACCCATGCGGCGACTCGCAGGGTTTCGGCGATGAACAATTTCCGGACAGGAAGTACACGTGGGCTGGCGGTGGTAGTTTTCGATATGGAATCTCCGCCGTTCATCTGGACCTACTTGCTATACAAAAGGCGTCGTGACCTTGGCTGTCACTCAATCCTCATTTTTCGTCTACCGTTAATTTCGTCTGGAGGTCAGAGATATTTATTTATTCTGATTTTCAA_-_ATGGCTACCTTTGCTGCTGCATCAGCCAAGCCCATGGCTGTCATCGATAACTCTCAGTTGAATCTATCTCAGAAGAAGTTTGATGGTCTTCGGATTGGCCACGCGTTCGCCAAGAGGAAAGACAGTTCCTCTTTGAAAGTCAAGGCTGTGAGCAGAATTAACATGACTATTGCAACAGATGTCTCTCGCTTTGAAGGAGTGACAATGGCACCTCCAGATCCAATTCTGGGTGTTTCAGAAGCATTCAAAGCAGATACAAGTGATTTGAAGCTTAATCTTGGTGTTGGAGCTTACAGAACAGAAGAACTTCAACCCTATGTGCTCAATGTGGTGAAAAAGGCAGAGAATCTGATGTTGGAAAAGGGAGACAATAAAGAGTATCTCCCTATTGAAGGTTTGGCAGCTTTTAATAAGGCTACTGTGGAATTGTTGCTGGGAGCTGACAATAATGCAACCAAGCAAGGACGGGTGGCTACTGTCCAAGGCCTTTCAGGAACTGGTTCTCTTCGCCTCGCTGCTGCCTTTATTCAAAGATATTTCCCTGGAGCACAAGTCTTGATTTCTTCTCCAACTTGGGGGAATCACAAGAATATTTTCAATGATGCTGGGGTTCCATGGTCGGAATACCGGTACTATGATCCTAAAACTGTAGGACTAGATTTTGAAGGGATGATTGCAGACATTAAGGCTGCACCAAGTGGTTCTTTTGTGCTGCTTCATGGTTGTGCTCACAATCCAACTGGAATTGATCCAACTCCTGAGCAGTGGGAGAAGATTGCTGATGTCATTCAGGAAAAGAATCTTACTGCTTTCTTTGATGTTGCTTATCAGGGATTTGCAAGTGGCAGTCTTGATCAGGATGCATCATCTGTGAGGTTGTTTGTAGCTCGTGGGATGGAAGTTTTTGTTGCTCAGTCCTACAGCAAGAACTTGGGTCTTTATGCAGAACGGATAGGAGCTATCAATGTTGTGTGCTCCTCATCAGATGCAGCAACTAGGGTGAAGAGCCAGCTTAAAAGGCTTGCTAGACCAATGTACTCAAATCCTCCAGTTCATGGGGCTCGAATTGTGGCAAATGTTGTTGGTGATCCTACTCTGTTTAAAGAATGGAAGTCAGAAATGGAACTTATGTCTGGAAGAATTAAGGGTGTGAGGCAGCGACTCTATGATAATCTGTCTGCAAAGGATAAGAGTGGGAAAGACTGGTCCTTTGTTCTTAGACAAATTGGCATGTTTTCCTTCACGGGCCTTAACAAAGCTCAGAGTGATAATATGACAAATAAGTGGCATGTCTACATGACAAAGGATGGGCGTATTTCCTTGGCTGGCCTGTCGCTGTCCAAATGCGAGTACCTTGCAGATGCCATATTTGACTCCTACTATAATGTCAGCTAA___ACAACAGGATTATATCAAAATCTAATATCAATTTTCTATGCTAGAAATATTACTAATTTTGAAGCACCTGACATCACATTGGGTGTTGATGTCTGAGGCATTCTTATCAGTCTGCATTCTACAAAATTTTGGCTGCTTACTGATCTTTCATTGTTCATCTTGTTAAATAAAGGTCTGACATTGGATGCCACCTGTTTGGCCGGAAGACCATAGCGTATTTTTCAAGCAGATTCTGCATTCTGCAGTTTCTGTCCTATTTTTCTAGAGAAGATAACATTTAAAGTTAGTAAAATATAAGCTCGGTTTTTGAAATCTAGGGATATTGCTGTTTAATTGTCTTCTATATTAAGGGATTTGAATAACTTTTGTAGTCCAGTGCCCAATTTCTGTAATGTCAGATGGAAAATTGTATCAGGTCTTAGCATATCTTGCACGTGATGTCATTGGTAGTTATTAGCACTTCTGCAGCTATATGCCGGAATTGACATAAATAGATTCAGTTCTGATAATCTGACTACAGAGCACTCTTGTCGGAAGATTCAATGCATTGTATGAGTGGTACTGCTAGCATATTGAGTTACATTTTGGAAATCATTGCGGCTTTGTTTGTTTCCCGGCCCCACAAATGAGAGTTGTGTTAGATTGAAATATTCCGGAAGGCTAAGACATCAAGTCTTGTAAACTGCATGAACAATCTGTAGGGTTCCAATACTTCTAAATAATTTAATTTATGCTGTTTGATTAACCGTATTCGCCTCATAACATGATTGTCTTAGTGGAGCTTG

Fln Alignment:

sp_v1.1_unigene15092___MATFAAASAKPMAVIDNSQLNLSQKKFDGLRIGHAFAKRKDSSSLKVKAVSRINMTIATDVSRFEGVTMAPPDPILGVSEAFKADTSDLKLNLGVGAYRTEELQPYVLNVVKKAENLMLEKGDNKEYLPIEGLAAFNKATVELLLGADNNATKQGRVATVQGLSGTGSLRLAAAFIQRYFPGAQVLISSPTWGNHKNIFNDAGVPWSEYRYYDPKTVGLDFEGMIADIKAAPSGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNLTAFFDVAYQGFASGSLDQDASSVRLFVARGMEVFVAQSYSKNLGLYAERIGAINVVCSSSDAATRVKSQLKRLARPMYSNPPVHGARIVANVVGDPTLFKEWKSEMELMSGRIKGVRQRLYDNLSAKDKSGKDWSFVLRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLSKCEYLADAIFDSYYNVS
A9NVA2_______________MATFAAASAKPMAVIDNSQLSLCQKKFDGLRVGYAFAKRKSSSSLKVKSVSRINMALATDVSRFEGVTMAPPDPILGVSEAFKADTNDLKLNLGVGAYRTEDLQPYVLNVVKKAENMMLEKGENKEYLPIEGLAAFNKATVELLLGADNDATKQGRVATVQGLSGTGSLRLAAAFIQRYFPGVQVLISSPTWGNHKNIFNDAGVPWSEYRYYDPKTVGLDFEGMIADIKAAPSGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKDLTAFFDVAYQGFASGSLDEDASSVRLFVARGMEVFVAQSYSKNLGLYAERIGAINVVCSSSDAAIRVKSQLKRLARPMYSNPPVHGAQIVANVVGNPTLFDEWKSEMELMSGRIKGVRQRLYDNLSAKDKTGKDWSFVLRQIGMFSFTGLNKAQSENMSNKWHIYMTKDGRISLAGLSLSKCEYLADAIVDSYYNVS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1517	33	66			0.997452
1907			3	96	0.99245
1909	94			5	0.999996
1912			5	94	0.999996
1913		3		96	0.99245
1917	96		3		0.988113
1922	5			93	0.999969
1923		3	1	94	0.924724
2021			5	94	0.998397
2023	94		5		0.998397
2025			5	94	0.998578
2027	5			94	0.998578
2033	5	94			0.998578
2034	94		5		0.998744
2036		94		5	0.998744
2038	5			94	0.998744
2039		5		94	0.998744
2043			5	94	0.998894
2147	8			91	1.0
2150			91	8	1.0
2152	8			91	1.0
2153		8		91	1.0
2155	8		91		1.0
2174		36		64	1.0
2200	67			32	1.0
2205		92	7		0.999999
2206	7			92	0.999999
2207		95	4		0.997218
2212	7	92			0.999999
2213	2		4	92	0.987114
2216	60		39		1.0
2224	5			88	0.982716
2225	5	5		88	0.982716
2226	94		5		0.998578
2235		93		6	0.999364
2239	92			7	0.999664
2240	87	4	8		0.999414
2242		8		86	0.999539
2243	4	9	86		0.999642
2246	4	9	85		0.999726
2249	6		20		1.0
2251		13	13	73	0.999956
2252	6	13	66	13	0.99996
2253	6	26	13		1.0
2254	80		20		1.0
2275			90	10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain