SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15091

Length: 2159 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15091
CGTCGTGACCTTGGCTGTCACTCAAATCTTACCTACTTTCAGGACCAAACATCAGTCACGGCAAAAGATCGAACTATCTTCTCCTCCACCACTATAAATATTACACGATCCCAGCCTCTATGGGGGTGCCACACAGCCAAGCTAAAGCAAGGTCTGTGGATTTCCGGAATCTCTAGATCTGGGCTAACATCCGGATCATTTCTCCTTCCCATTTTTTCATCTGGGCATTACTAGTGTGCCCTTTCCTACTTTGGGTTTGCTATTGCATTTCCTTGTTTCGTTCTGAACAATGGATCCCGTGAACGTATGGGGCAACACGCCACTGAAGGTTGTGGACGAGGAGATCTTTGATCTGATTGAGAAGGAGAAGAGAAGGCAATGCAGGGGAATCGAACTCATAGCCTCCGAGAACTTCACATCCCTGGCAGTCATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGATCAAGGGCCCTCCAGGCCTTCCATCTGGATTCCGAGAAATGGGGTGTGAATGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCACATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGGAAATCCATTTGACTATTGTGATTTGGTTACCACAACCACCCACAAGAGTTTGAGGGGTCCAAGAGCAGGGATGATCTTCTATAGGAAAGGCCCAAAGCCTCCTAAAAAGGGACAGCCAGAAGGTGCCCTCTATGATTACGAGGACAGAGTAAACTTTTCTGTGTTTCCGTCCCTTCAAGGAGGGCCACACAACCACCAGATTGCAGCATTGGCTGTGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACAGAAAATCATCTAGTTCTGTGGGATCTCCGGCCAATTGGACTGACTGGAAATAAGGTGGAGAAAGTGTGTGACCTGTGTAATATAACAATCAACAAGAATGCAGTTTATGGTGACAGTAGTGCTCTGTCCCCTGGGGGTGTTCGTATTGGTACCCCTGCTATGACCTCCAGAGGTCTGAAGGAAGCTGATTTTGAGCAGATTGGAGAGTTCCTCCACCAGTCTATTATCATCACTTTGGCTATCCAGAGCGAACATGGGAAGCTTCTCAAGGACTTCAACAAAGGTTTGGCGGGCAACAAGGACATTGAAAATCTGAAAGCTCAAGTGGAGAAATTCTCTGCACAGTTTGATATGCCTGGCTTTGATGTAGCTACAATGAAGTTCCAATAAGTGATCATAGGAATAGCATAATTCCTTTTCCTTTTGGGTGCATTGCTGTTAGCATTGAAAGTTGGTAGCTAGAGGGATATATTCTATAGCTTGATGAATAAATATGTATTGTTCGTGAGTTTCAGAGTCCTCAAAATTTGAGGACTTATTTACTGGTGTAATCAGTAGAAGATGACTAAATTTAGTAGTCAGATGTGTTGAATTGATTTTTCAGTTAAACATACACAAAGTCTAGTCTTTTTCCGGCGTCATCTTTGTAATCTTCTGCTTTTGTTTACATGTCCCATGCATTGGGCAAATTCTGCAATTGGAGCTATGCAATCTTATTTTGTTAGCCGATTAAAAGAAATACTTATATGTAAAATGGTGATAGTTCTCTATCGGTTTAAATAAACAAGTTACTTTTGTGAACTAGAGNGGAACTATACATAGACCCATATTTTTTTTAAAATAAAAA

Ace file of the UniGene sp_v1.1_unigene15091

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=1 Tax=Picea sitchensis RepID=B8LLP6_PICSI	-	-	95%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine hydroxymethyltransferase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycine hydroxymethyltransferase.	EC:2.1.2.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	91%
Blast2go	Cyanoamino acid metabolism	00460	91%
Blast2go	One carbon pool by folate	00670	91%
Blast2go	Methane metabolism	00680	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	L-serine metabolic process	GO:0006563	Biological Process	91%
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	91%
Blast2go	glycine metabolic process	GO:0006544	Biological Process	91%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	91%
Blast2go	glycine hydroxymethyltransferase activity	GO:0004372	Molecular Function	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Serine hydroxymethyltransferase	IPR001085	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	91%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	91%
Blast2go	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	IPR019798	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP6

Fln msg:

Fln protein: MDPVNVWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCRSRALQAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGALYDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSIIITLAIQSEHGKLLKDFNKGLAGNKDIENLKAQVEKFSAQFDMPGFDVATMKFQ*

Protein Length: 472

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCTTACCTACTTTCAGGACCAAACATCAGTCACGGCAAAAGATCGAACTATCTTCTCCTCCACCACTATAAATATTACACGATCCCAGCCTCTATGGGGGTGCCACACAGCCAAGCTAAAGCAAGGTCTGTGGATTTCCGGAATCTCTAGATCTGGGCTAACATCCGGATCATTTCTCCTTCCCATTTTTTCATCTGGGCATTACTAGTGTGCCCTTTCCTACTTTGGGTTTGCTATTGCATTTCCTTGTTTCGTTCTGAACA_-_ATGGATCCCGTGAACGTATGGGGCAACACGCCACTGAAGGTTGTGGACGAGGAGATCTTTGATCTGATTGAGAAGGAGAAGAGAAGGCAATGCAGGGGAATCGAACTCATAGCCTCCGAGAACTTCACATCCCTGGCAGTCATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGATCAAGGGCCCTCCAGGCCTTCCATCTGGATTCCGAGAAATGGGGTGTGAATGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCACATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGGAAATCCATTTGACTATTGTGATTTGGTTACCACAACCACCCACAAGAGTTTGAGGGGTCCAAGAGCAGGGATGATCTTCTATAGGAAAGGCCCAAAGCCTCCTAAAAAGGGACAGCCAGAAGGTGCCCTCTATGATTACGAGGACAGAGTAAACTTTTCTGTGTTTCCGTCCCTTCAAGGAGGGCCACACAACCACCAGATTGCAGCATTGGCTGTGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACAGAAAATCATCTAGTTCTGTGGGATCTCCGGCCAATTGGACTGACTGGAAATAAGGTGGAGAAAGTGTGTGACCTGTGTAATATAACAATCAACAAGAATGCAGTTTATGGTGACAGTAGTGCTCTGTCCCCTGGGGGTGTTCGTATTGGTACCCCTGCTATGACCTCCAGAGGTCTGAAGGAAGCTGATTTTGAGCAGATTGGAGAGTTCCTCCACCAGTCTATTATCATCACTTTGGCTATCCAGAGCGAACATGGGAAGCTTCTCAAGGACTTCAACAAAGGTTTGGCGGGCAACAAGGACATTGAAAATCTGAAAGCTCAAGTGGAGAAATTCTCTGCACAGTTTGATATGCCTGGCTTTGATGTAGCTACAATGAAGTTCCAATAA___GTGATCATAGGAATAGCATAATTCCTTTTCCTTTTGGGTGCATTGCTGTTAGCATTGAAAGTTGGTAGCTAGAGGGATATATTCTATAGCTTGATGAATAAATATGTATTGTTCGTGAGTTTCAGAGTCCTCAAAATTTGAGGACTTATTTACTGGTGTAATCAGTAGAAGATGACTAAATTTAGTAGTCAGATGTGTTGAATTGATTTTTCAGTTAAACATACACAAAGTCTAGTCTTTTTCCGGCGTCATCTTTGTAATCTTCTGCTTTTGTTTACATGTCCCATGCATTGGGCAAATTCTGCAATTGGAGCTATGCAATCTTATTTTGTTAGCCGATTAAAAGAAATACTTATATGTAAAATGGTGATAGTTCTCTATCGGTTTAAATAAACAAGTTACTTTTGTGAACTAGAGaGGAACTATACATAGACCCATATTTTTTTTAAAATAAAAA

Fln Alignment:

sp_v1.1_unigene15091___MDPVNVWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCRSRALQAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGALYDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSIIITLAIQSEHGKLLKDFNKGLAGNKDIENLKAQVEKFSAQFDMPGFDVATMKFQ
B8LLP6_______________MDPVNEWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEFIDLIENLCRSRALEAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGALYDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSINITLSIQKEYGKLLKDFNKGLAGNKDMENLKAEVEKFSAKFDMPGFDVATMKYQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1351			3	96	0.999917
1379			97	2	0.924243
1448		0	82		1.0
1695	94		5		1.0
1907	90		9		0.999872
1932	55		45		1.0
1948	3	96			0.990463
1952		51		48	1.0
1967		96	3		0.993037
1968	3			96	0.993037
1970	3	96			0.993037
2011	48			51	1.0
2116	75	25			1.0
2118	11	22		66	0.999999
2120	28		42		1.0
2122	28	28	42		1.0
2123	60		40		1.0
2124	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain