SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15087

Length: 2412 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15087
CGTCGTGACCTTGGCTGTCACTCAAATACGTGTACTGCGGGGTCTTGGAACTTTTATTTGCATTTTCATCGTTCAAAGCTGTTACAAGGGTTCGAATTCTAAGATTGAAACCCTCAAATACTCGTCGAGTTCCGCATAAAAGCCCGCAGACGGTCGTCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTTGTATGGTCTCCATGGATCGGAGATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGTGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGACGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATCATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCTGCGGATGATTTTGAACCAGCCCTTATCCCACCTAAGACAATTCCCGACCCAGAGGATAAGAAGCCAGAAGACTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCGGAAAAGCCCGAGGACTGGGATGAGGATGCACCGATGGAAATTGAAGATGTGGAAGCCGTGAAGCCGGAAGGATGGCTGGATGATGAACCAGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAAGAAGATGGAGAATGGGAGGCACCAAAGGTTTCTAATCCCAAGTGCGATGAGGCACCAGGATGTGGTGAATGGACTAGACCCATGAAGAGCAACCCTGACTACAAGGGCAAGTGGTATGCTCCGATGATTGACAATCCTAACTACAAGGGTATCTGGAAGCCACAAGAAATTCCCAACCCTGAGTACTTTGAATTGGAGAAGCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATACTTATCACACATGATGAGAAGGTTGCGGAGGAGTACAGAAAGAATACATGGAAGGGAAAATTTAGCAATGAAAAAGAAGAGGAAGATGTGGATAGTCCTCTGCCGGGAGAGCTCTCTGGTTTCCAGAAGAAAATTTTTGACGTCCTCTACAAGATCGCAAACATCCCATTCTTGGATGCATACAAGTTGAAGATTATTGATCTAATCGAACAAGGTGAGAAGAAACCAAATTTGACAATAGGCATTTTAGTGGCCGTTTTGGTGGTTCTGTTGACAACAATTTACAAGCTCCTTTTCGGTGGCAAGAAGCAACCTGTTCAGAAGGTAGAGTTGAAAAGTCAGCCCGAGCAGGATGCTTCTGCTTCTGAGAATAACAAAGAAGATTCAGATCGTGCAGCAGAGAATGAAAAATCTGATGCAGCAGAGAAGGAAAAGTCTGGAGATGAAAATGAAATAGAAGGAGAAGATGCAGCTCCCCGCAGGAGAGTAAGGCGCGAGACATAAATCCTAGTTCACTGAGGAAAAATTTCGGACATTAAAGTTCAGTGTATGGAATGAACAAATCTTTCAAAATTCATCCATCTGTTTTTGGTTGTAAGTCATAGATAAAATAGGAGGAACGGTCAGAGAATCTGCATCCCCATCATGCGTGGTGGATTTGGATAACATTTTTTCCAGAGTTCTGTTTCTAGGTGTTTGTTAGACATTGGAAGCATAGCTTTTTTTTATTTTTATTTTGCTTATTGAAAATGAGCTGACCTCTAGATGTGTTGTAAAACCCCACTCATTTGCGAAATTGTTATCATTAATTTACTTGTACCACTCTGTTGGGAATAGTCATGGGATGTCTGCATTTCCTACTCTTCTAATATTGATTTAAATGGTCTCATTGGTGTTTGAAGCTATTAATTTCAAATTGGCTTTCTGATTGTGAATGCAAATTGATTCTGGGCAGTTGAAATTTTCATGACTGAGCATAATGATCAAGTGAAGACGTTGGTACTTTTAAAAACTTT

Ace file of the UniGene sp_v1.1_unigene15087

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calnexin; K08054 calnexin	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	calnexin 1	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	81%
Blast2go	sugar binding	GO:0005529	Molecular Function	81%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	81%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	81%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	81%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT78

Fln msg:

Fln protein: MVSMDRRWIPLLLALLCLMSPLNALVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEVARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIPPKTIPDPEDKKPEDWDERAKIPDPDAEKPEDWDEDAPMEIEDVEAVKPEGWLDDEPEEIDDPEATKPDDWDDEEDGEWEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQEIPNPEYFELEKPDLEPIAAIGIEIWTMQDGILFDNILITHDEKVAEEYRKNTWKGKFSNEKEEEDVDSPLPGELSGFQKKIFDVLYKIANIPFLDAYKLKIIDLIEQGEKKPNLTIGILVAVLVVLLTTIYKLLFGGKKQPVQKVELKSQPEQDASASENNKEDSDRAAENEKSDAAEKEKSGDENEIEGEDAAPRRRVRRET*

Protein Length: 555

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATACGTGTACTGCGGGGTCTTGGAACTTTTATTTGCATTTTCATCGTTCAAAGCTGTTACAAGGGTTCGAATTCTAAGATTGAAACCCTCAAATACTCGTCGAGTTCCGCATAAAAGCCCGCAGACGGTCGTCTCTGGAGATAGCTTAACGTACGCAGAGTGATTGGCTGTGTAAAGACGTTTATTTTCAGGTGGTTTGCAGGCATTTTTTGT_-_ATGGTCTCCATGGATCGGAGATGGATTCCATTGCTTTTGGCTCTGCTGTGCCTAATGTCACCGTTAAATGCCCTCGTTTCCGCTTCTGAATCGACTTTCTATGAATCTTTTGACGAGTCGTTCGAAGGGAGATGGATCGTATCCCAAAAGGAAGATTATAAAGGTGTATGGAAGTACGAAAAGAGTAAAGGTCATGAAGACTATGGTCTCCTTGTGAGTGAAGTGGCCAGAAAGTATGCCATAGTAAGAGAATTACCAGAGACCATTGACCCCAAGGACGGGTCACTGGTGTTACAGTATGAGGTCCGCTTACAAAATGGGCTGGAGTGTGGAGGTGCTTACTTGAAGTACCTACGGCCTCAAGAAGCTGGATGGAAACCAGCAGAGTTTGACAATGAATCCCCCTACTCCATCATGTTTGGACCAGATAAATGCGGTGCTACTAACAAAGTACACTTCATCTTCAAGCACAAGAATCCAAAGTCCGGGGAATATGTTGAGCACCATCTCAAGTATCCTCCATCTACGCCCTCTGACAAGAAGACTCATGTTTATTCAGCCATCTTGACACCTGATAATCAAGTTAGAATTTTAATTGATGGCGAAGAGAAGAAAAAGGCAAATCTTTTGTCTGCGGATGATTTTGAACCAGCCCTTATCCCACCTAAGACAATTCCCGACCCAGAGGATAAGAAGCCAGAAGACTGGGATGAGAGAGCAAAGATCCCTGATCCTGATGCGGAAAAGCCCGAGGACTGGGATGAGGATGCACCGATGGAAATTGAAGATGTGGAAGCCGTGAAGCCGGAAGGATGGCTGGATGATGAACCAGAGGAGATTGATGATCCTGAAGCTACAAAGCCAGATGATTGGGATGATGAAGAAGATGGAGAATGGGAGGCACCAAAGGTTTCTAATCCCAAGTGCGATGAGGCACCAGGATGTGGTGAATGGACTAGACCCATGAAGAGCAACCCTGACTACAAGGGCAAGTGGTATGCTCCGATGATTGACAATCCTAACTACAAGGGTATCTGGAAGCCACAAGAAATTCCCAACCCTGAGTACTTTGAATTGGAGAAGCCTGATTTAGAACCAATTGCAGCTATTGGTATTGAAATCTGGACTATGCAAGATGGAATCTTGTTTGACAACATACTTATCACACATGATGAGAAGGTTGCGGAGGAGTACAGAAAGAATACATGGAAGGGAAAATTTAGCAATGAAAAAGAAGAGGAAGATGTGGATAGTCCTCTGCCGGGAGAGCTCTCTGGTTTCCAGAAGAAAATTTTTGACGTCCTCTACAAGATCGCAAACATCCCATTCTTGGATGCATACAAGTTGAAGATTATTGATCTAATCGAACAAGGTGAGAAGAAACCAAATTTGACAATAGGCATTTTAGTGGCCGTTTTGGTGGTTCTGTTGACAACAATTTACAAGCTCCTTTTCGGTGGCAAGAAGCAACCTGTTCAGAAGGTAGAGTTGAAAAGTCAGCCCGAGCAGGATGCTTCTGCTTCTGAGAATAACAAAGAAGATTCAGATCGTGCAGCAGAGAATGAAAAATCTGATGCAGCAGAGAAGGAAAAGTCTGGAGATGAAAATGAAATAGAAGGAGAAGATGCAGCTCCCCGCAGGAGAGTAAGGCGCGAGACATAA___ATCCTAGTTCACTGAGGAAAAATTTCGGACATTAAAGTTCAGTGTATGGAATGAACAAATCTTTCAAAATTCATCCATCTGTTTTTGGTTGTAAGTCATAGATAAAATAGGAGGAACGGTCAGAGAATCTGCATCCCCATCATGCGTGGTGGATTTGGATAACATTTTTTCCAGAGTTCTGTTTCTAGGTGTTTGTTAGACATTGGAAGCATAGCTTTTTTTTATTTTTATTTTGCTTATTGAAAATGAGCTGACCTCTAGATGTGTTGTAAAACCCCACTCATTTGCGAAATTGTTATCATTAATTTACTTGTACCACTCTGTTGGGAATAGTCATGGGATGTCTGCATTTCCTACTCTTCTAATATTGATTTAAATGGTCTCATTGGTGTTTGAAGCTATTAATTTCAAATTGGCTTTCTGATTGTGAATGCAAATTGATTCTGGGCAGTTGAAATTTTCATGACTGAGCATAATGATCAAGTGAAGACGTTGGTACTTTTAAAAACTTT

Fln Alignment:

sp_v1.1_unigene15087___MVSMDRRWIPXXXXXXXXXXXXXXXVSASESTFYESFDESFEGRWIVSQKEDYKGVWKYEKSKGHEDYGLLVSEVARKYAIVRELPETIDPKDGSLVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSTPSDKKTHVYSAILTPDNQVRILIDGEEKKKANLLSADDFEPALIXXXXXXXXXXXXXXXXXXRAKIPDPDAEKPEDWDEDAPMEIEDVEAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQEIPNPEYFELEKPDLEPIAAIGIEIWTMQDGILFDNILITHDEKVAEEYRKNTWKGKFSNEKE---EEDVDSPLPGELSGFQKKIFDVLYKIANIPFLDAYKLKIIDLIEQGEKKPNXXXXXXXXXXXXXXXXXYKLLFGGKKQPVQKVELKSQPEQDASASENNKEDSDRAAENEKSDAAEKEKSGDENEIEGEDAAPR-RRVRRET
C0PT78_______________MVSMDRRWIPSLLAAVCLISSLNVLVSASEQTFYESFDESFDGRWIASQKEDYKGVWKHEKSEGHEDYGLLVSEVAKKYAIVRELPETIDPKDGLVVLQYEVRLQNGLECGGAYLKYLRPQEAGWKPAEFDNESPYSIMFGPDKCGATNKVHFIYKHKNPKSGEYVEHHLKYPPSTPSDKLTHVYTAILKPNNEVRILIDGEEKKKANLLSGDDFEPALIPPETIPDPEDKKPEDWDERAKIPDPDAKKPEDWDEDAPMEIEDLEAVKPEGWLDDEPEEIDDPESTKPDDWDDEEDGEWEAPKVSNPKCDEAPGCGEWTRPMKSNPDYKGKWYAPMIDNPNYKGIWKPQQIPNPDFFELEKPDLEPIAAIGIEIWTMQDGILFDNILITGDEKVAEEYRVKTWKEKFTIEKEREPSEDVDVPLPGELSGLQKKIFDVLYRIANIPFLDAYKLKIIDLIEQGEKKPNLTIGILVAVLLVILTAVYRVLFGSKKQPVQVAELNTQPEQDASASENNKEASDGAAEN--------EKSGDENEIEGEDAAPRQRRVRRET

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1991			97	2	0.962263
2112	97		2		0.953846
2134	33			66	0.997452
2135	66			33	0.997452
2139			33	66	0.997452
2140		33	66		0.997452
2141		66		33	0.997452
2143	33			66	0.997452
2144	66			33	0.997452
2146			33	66	0.997452
2147	33		66		0.997452
2267		76		7	0.999983
2338			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain