SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15066

Length: 1476 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15066

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9SC23_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	endosomal p24a protein	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nonaspanin (TM9SF)	IPR004240	-	0.0	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWV0

Fln msg: your sequence is shorter than subject: 393 - 664

Fln protein: RRDLGCHSRWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVLVIFLRTVRRDLTRYEELDKEAQMNEELSGWKLVVGDVFRSPAHSELLCIMVGDGVQILGMAVVTILFAAFGFMSPASRGTLVTGMLFFYLVLGVAAGYVAVRMWRTVKGGDHRGWKSISWRVACFFPGIAFLILTVLNFLLWGSQSTGAIPISLFIVLLALWFCISVPLTLLGGFFGAKAPHIEFPVRTNQIPREIPPQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWLGRVYYVFGFLFIVLILLVVVCAEVSLVLTYMHLCVEDWKWWWKAFFASGSVSIYIFLYSLNYLVFYLRSLSGPVSAALYIGYSLLMVFAIMLATGTIGLLASFWFVHYLFSSVKLD*

Protein Length: 394

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATGGCCATCAAGATGGGATGCGTACTTGAAGATGGAAGGAGCCCGGGTGCACTGGTTTTCAATTCTAAACTCGCTCATGGTCATTTCTTTCCTTGCCGGTATTGTGCTTGTTATCTTCCTTCGAACTGTAAGGCGAGATCTGACCCGTTATGAGGAGCTGGACAAGGAAGCTCAAATGAATGAAGAACTCTCAGGATGGAAACTTGTTGTGGGTGATGTTTTCCGGTCCCCTGCTCACTCAGAGCTTCTCTGCATTATGGTGGGTGATGGAGTGCAGATATTGGGTATGGCGGTAGTGACTATTTTGTTTGCTGCCTTTGGTTTCATGTCTCCAGCATCTCGAGGAACTCTCGTCACTGGAATGCTATTTTTCTACCTTGTTCTCGGAGTGGCAGCAGGTTATGTTGCTGTAAGAATGTGGAGAACCGTGAAAGGGGGGGATCACAGGGGCTGGAAATCGATCTCATGGCGTGTTGCGTGCTTTTTCCCAGGCATTGCTTTCTTGATTCTCACAGTGCTTAACTTCCTTCTGTGGGGAAGTCAAAGCACTGGAGCTATACCGATCTCTTTATTTATCGTTCTTCTGGCCCTGTGGTTTTGTATTTCAGTACCTCTGACTCTTTTGGGTGGGTTTTTTGGTGCCAAGGCACCGCATATTGAATTTCCTGTGCGTACCAATCAGATTCCCAGAGAGATTCCACCCCAGAAGTATCCTTCTTGGTTGCTTGTTCTTGGTGCAGGAACACTTCCTTTCGGCACTCTTTTCATTGAGCTCTTCTTCATCATGTCAAGCATCTGGTTGGGGCGGGTTTACTATGTTTTTGGATTTCTCTTTATTGTATTGATTCTCCTTGTAGTTGTCTGTGCTGAGGTTTCTCTTGTTCTGACTTACATGCACCTGTGTGTGGAAGATTGGAAGTGGTGGTGGAAAGCATTCTTTGCATCTGGCTCTGTGTCCATTTATATTTTTCTCTATTCCTTAAACTATCTGGTGTTTTATCTGCGCAGCCTTAGTGGTCCTGTGTCAGCTGCTTTGTACATTGGCTACTCTCTGCTTATGGTCTTTGCCATCATGCTCGCCACAGGGACAATTGGACTCCTTGCATCCTTCTGGTTTGTGCATTACCTCTTCTCTTCTGTTAAACTAGATTGA___TGGTCAAAGCACAGTGGTGGTCAGTGGTCATCAAGCCAGGGGATCGTCTGAAGTTTATGTATTATGTTGTCTTGAAGCCTCTGACATGTCTACAATGGGTTTTAGCTGGTTGATGAGACCTGGACTCAGTTTTATGCTTCTCACAGAAAGGTTCAGAATATGAATGACTTGATAGCAATTTTGTAAGACATGATAATATGATCATTTGAAGCAGTTCCTTACTCATTGCATGTTGTTATTTATCTGCTGCTGATCATTCAGACAGCTGCTTAGCAAGGATTTTGGTTGTAGGATTTT

Fln Alignment:

sp_v1.1_unigene15066___RWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVLVIFLRTVRRDLTRYEELDKEAQMNEELSGWKLVVGDVFRSPAHSELLCIMVGDGVQILGMAVVTILFAAFGFMSPASRGTLVTGMLFFXXXXXXXXXXXXXRMWRTVKGGDHRGWKSISWRVACFFPGIAFLILTVLNFLLWGSQSTGAIPISLFIVLLALWFCISVPLTLLGGFFGAKAPHIEFPVRTNQIPREIPPQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWLGRVYYVFGXXXXXXXXXXXXCAEVSLVLTYMHLCVEDWKWWWKAFFASGSVSIYIFLYSLNYLVFYLRSLSGPVSAALYIGYSLLMVFAIMLATGTIGLLASFWFVHYLFSSVKLD
A9NWV0_______________KWPSRWDAYLKMEGARVHWFSILNSLMVISFLAGIVLVIFLRTVRRDLTRYEDLDKEAQMNEELSGWKLVVGDVFRSPAHSELLCIMVGDGVQILGMAVVTILFAAFGFMSPASRGTLITGMLFFYLVLGIAAGYVAVRMWRTLKGGDHRGWKSISWRVACFFPGIAFLILTVLNFLLWGSQSTGAIPISLFIVLLALWFCISVPLTLLGGYFGAKAPHIEYPVRTNQIPREIPPQKYPSWMLVLGAGTLPFGTLFIELFFIMSSIWLGRVYYVFGFLFIVLILLVVVCAEVSLVLTYMHLCVEDWKWWWKAFFASGSVSIYIFLYSINYLVFYLRSLSGPVSAALYIGYSLLMVFAIMLATGTIGLLASFWFVHYLFSSVKLD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
919	94		5		0.998578
934		4	95		0.997218
969	92		8		1.0
977		94		2	0.967557
983		94	3		0.960243
984		96	3		0.993037
986		9		90	1.0
988		5		94	0.999997
989	96		3		0.993037
990			3	90	0.99996
991	96	3			0.993037
993			3	96	0.993037
995		3		96	0.993037
996	3			96	0.993037
1000	3			96	0.99245
1047		3		96	0.987242
1168	94			2	0.967557
1317		14		85	0.993533
1326	83		16		0.994512
1386			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain