SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15064

Length: 2193 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15064
ATGGGGACGAGCCCCCCTCAAGTCCCTTCACTTGCCTTGCTCTGGCCTGGAAAATAGAGCTCTCTAGGCTTGCCTCTGTGAAATGACGGGGGGAGGGTTTTGGTTCTAGCAGGGTTGCTGCCATTAATATCCCTGCCAAAGGGATCTCTTTTCCGGGATCTGTTAGCTGGTGGTGGCAGCAGAGTGCCTTGAGCCACTAAAACTCCTGCCATTTTAGCGGTTGAGTGCGTAAATGCCCCTTACCTACTTCAAGTTTAGTCATCGTGTCACTGCCGTGTGTTGAATATCCAGTGTATCTCGAGGATATATACATTGTATATCGATATTCTGAAACCCACACTGCTGTATCTTTGCCGCTGCTTGCCGCTCAAAATGGAGACCTTAGGCGCTGTTTTGCTGTTTTTGGCCGTGTTGAGCCCTGTTTTTGGCAGAGAGCTGGTGGCCCAGAAGGATATATACAGTACTCTGGATGTGCAGACCGCTCTGAAAGTTGCCAGGGGGGAATCTGTAGAAACTGCTAAGGGGGAAACCCTTGAGGTGAAAACCTGGTCGATCCCTCTGGTTCACAGAGATGCAATGAAGGGAAGCCGTAATGGTAAGGAACTTAGCTACAAGGAACGCATGCAGCAAAGGCTGAAGCGAGATGCGGCACGGGTGGCCGCCATTAACTCACGGCTGGAGCTTGCCGTGAACGGGATCAAACGTTCGAGTCTCAGGCCCGACTCCTCATCGGCTTCTAGCATGTCGGAGTCTGACTTCCAGAGCCCCGTGGTCTCCGGCATGGACCAAGGTAGCGGCGAATACTTCTCCCGTATCGGTGTCGGTTCTCCGCAGCGCGACCAGCTTATGGTGCTCGACACCGGCTCTGATGTGAGCTGGATCCAGTGCAACCCCTGTTCGGATTGTTACCAGCAAGCTGACCCCATTTACACCCCGGCGCTCTCTTCGACCTTTAAGTTAGTCGGCTGCCAGGCGAGCCTCTGCCAGCAGCTCGACGTCTCGGGGTGCAGTCGCAACGGGAGCTGCATGTACCAGGTGAGCTACGGCGACGGATCGTACACGTTGGGGAACTTCGCAACGGAGACGCTAACACTCGGGGGGACAACGGTGCCGAACATGGCCATCGGCTGTGGCCACGATAACGAGGGACTGTTCGTCGGTGCCTCGGGGCTTCTTGGCCTCGGCGGAGGGGCGTTGTCGTTCCCTTCGCAGTTAACGGACGAAAGCGGTAAAATATTTTCCTACTGTCTCGTAGACCGTGACTCCGAATCCTCGAGCACTCTCCAGTTCGGCCGGGCCGCGGTGCCCAACGGAGCCGTGGTAGCGCCGATGCTGAAGAACAGCCGCCTCGACACCTTCTACTATGTCTCCCTCTCTGGAATCAGCGTCGGCGGCAAGATGCTCTCGATCTCGGATTCCGTCTTCGGCATCGACGCCTCCGGTAACGGCGGCGTCATTGTTGACTCCGGGACCGCCGTCACGCGACTGCAGACGGCCGCTTACGATTCCCTCCGCGATGCCTTCAGAGCCGGGACGAAGAATTTGCCGTCAACTGATGGTGTCTCGCTCTTCGACACCTGCTACGATCTCTCCTCCAAAGATTCCGTCGACGTGCCGACCGTCGGTTTCCATTTTCCCGGCGGCGGCAGTATGTCGCTTCCGGCGAAGAATTATCTGGTTCCCGTCGACTCGATGGGCACTTTCTGTTTCGCCTTTGCGCCGACGTCGTCGAGTCTGTCTATTGTCGGGAATATTCAGCAGCAGGGAACCCGAGTTTCGTTTGACCGTGTTAATAATCAAGTGGGATTTGCCGTCAACAAGTGCTGAATCCCGTCAAAATCAAGTGGGTTTTGCTGTGAACAAGCGCTGATTTCCGTCAAGAGGAAATAACCTAGTTTTTTTATTTCAGCTCAGCTATGTACGACTGTCGCAGATCTCGTTTTTAAGTTATTAATCCTTTGTGTAATTGAATTAAATATGTGAGGAAAAACAGAGCACAGGTCGATGCTGTAAATGTTTTTAAATTATATTTTATGCTTTGGTCTGGAATTGTAATATTTGTCACTAGCCCTATAGTTTTTATTTCTAATGTTTTAATGAATGTATCAGACTACGAAATAATATTTTTGCATCACACTTTGTGTTTCTCTCTGGCCAGGAAATAATAAAATTTAATTGAATACTCTTCTTGAC

Ace file of the UniGene sp_v1.1_unigene15064 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] gb\|AAG50814.1\|AC079281_16 hypothetical protein [Arabidopsis thaliana] gb\|AAM20575.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15613.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00436.1\| hypot	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	aspartyl protease family protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	72%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase A1	IPR001461	-	72%
Blast2go	Peptidase aspartic, active site	IPR001969	-	72%
Blast2go	Peptidase aspartic, catalytic	IPR009007	-	72%
Blast2go	Peptidase aspartic	IPR021109	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE4

Fln msg:

Fln protein: METLGAVLLFLAVLSPVFGRELVAQKDIYSTLDVQTALKVARGESVETAKGETLEVKTWSIPLVHRDAMKGSRNGKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRSSLRPDSSSASSMSESDFQSPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTLGGTTVPNMAIGCGHDNEGLFVGASGLLGLGGGALSFPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMLKNSRLDTFYYVSLSGISVGGKMLSISDSVFGIDASGNGGVIVDSGTAVTRLQTAAYDSLRDAFRAGTKNLPSTDGVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVNKC*

Protein Length: 486

Fln nts: ATGGGGACGAGCCCCCCTCAAGTCCCTTCACTTGCCTTGCTCTGGCCTGGAAAATAGAGCTCTCTAGGCTTGCCTCTGTGAAATGACGGGGGGAGGGTTTTGGTTCTAGCAGGGTTGCTGCCATTAATATCCCTGCCAAAGGGATCTCTTTTCCGGGATCTGTTAGCTGGTGGTGGCAGCAGAGTGCCTTGAGCCACTAAAACTCCTGCCATTTTAGCGGTTGAGTGCGTAAATGCCCCTTACCTACTTCAAGTTTAGTCATCGTGTCACTGCCGTGTGTTGAATATCCAGTGTATCTCGAGGATATATACATTGTATATCGATATTCTGAAACCCACACTGCTGTATCTTTGCCGCTGCTTGCCGCTCAAA_-_ATGGAGACCTTAGGCGCTGTTTTGCTGTTTTTGGCCGTGTTGAGCCCTGTTTTTGGCAGAGAGCTGGTGGCCCAGAAGGATATATACAGTACTCTGGATGTGCAGACCGCTCTGAAAGTTGCCAGGGGGGAATCTGTAGAAACTGCTAAGGGGGAAACCCTTGAGGTGAAAACCTGGTCGATCCCTCTGGTTCACAGAGATGCAATGAAGGGAAGCCGTAATGGTAAGGAACTTAGCTACAAGGAACGCATGCAGCAAAGGCTGAAGCGAGATGCGGCACGGGTGGCCGCCATTAACTCACGGCTGGAGCTTGCCGTGAACGGGATCAAACGTTCGAGTCTCAGGCCCGACTCCTCATCGGCTTCTAGCATGTCGGAGTCTGACTTCCAGAGCCCCGTGGTCTCCGGCATGGACCAAGGTAGCGGCGAATACTTCTCCCGTATCGGTGTCGGTTCTCCGCAGCGCGACCAGCTTATGGTGCTCGACACCGGCTCTGATGTGAGCTGGATCCAGTGCAACCCCTGTTCGGATTGTTACCAGCAAGCTGACCCCATTTACACCCCGGCGCTCTCTTCGACCTTTAAGTTAGTCGGCTGCCAGGCGAGCCTCTGCCAGCAGCTCGACGTCTCGGGGTGCAGTCGCAACGGGAGCTGCATGTACCAGGTGAGCTACGGCGACGGATCGTACACGTTGGGGAACTTCGCAACGGAGACGCTAACACTCGGGGGGACAACGGTGCCGAACATGGCCATCGGCTGTGGCCACGATAACGAGGGACTGTTCGTCGGTGCCTCGGGGCTTCTTGGCCTCGGCGGAGGGGCGTTGTCGTTCCCTTCGCAGTTAACGGACGAAAGCGGTAAAATATTTTCCTACTGTCTCGTAGACCGTGACTCCGAATCCTCGAGCACTCTCCAGTTCGGCCGGGCCGCGGTGCCCAACGGAGCCGTGGTAGCGCCGATGCTGAAGAACAGCCGCCTCGACACCTTCTACTATGTCTCCCTCTCTGGAATCAGCGTCGGCGGCAAGATGCTCTCGATCTCGGATTCCGTCTTCGGCATCGACGCCTCCGGTAACGGCGGCGTCATTGTTGACTCCGGGACCGCCGTCACGCGACTGCAGACGGCCGCTTACGATTCCCTCCGCGATGCCTTCAGAGCCGGGACGAAGAATTTGCCGTCAACTGATGGTGTCTCGCTCTTCGACACCTGCTACGATCTCTCCTCCAAAGATTCCGTCGACGTGCCGACCGTCGGTTTCCATTTTCCCGGCGGCGGCAGTATGTCGCTTCCGGCGAAGAATTATCTGGTTCCCGTCGACTCGATGGGCACTTTCTGTTTCGCCTTTGCGCCGACGTCGTCGAGTCTGTCTATTGTCGGGAATATTCAGCAGCAGGGAACCCGAGTTTCGTTTGACCGTGTTAATAATCAAGTGGGATTTGCCGTCAACAAGTGCTGA___ATCCCGTCAAAATCAAGTGGGTTTTGCTGTGAACAAGCGCTGATTTCCGTCAAGAGGAAATAACCTAGTTTTTTTATTTCAGCTCAGCTATGTACGACTGTCGCAGATCTCGTTTTTAAGTTATTAATCCTTTGTGTAATTGAATTAAATATGTGAGGAAAAACAGAGCACAGGTCGATGCTGTAAATGTTTTTAAATTATATTTTATGCTTTGGTCTGGAATTGTAATATTTGTCACTAGCCCTATAGTTTTTATTTCTAATGTTTTAATGAATGTATCAGACTACGAAATAATATTTTTGCATCACACTTTGTGTTTCTCTCTGGCCAGGAAATAATAAAATTTAATTGAATACTCTTCTTGAC

Fln Alignment:

sp_v1.1_unigene15064___METLGAVLLFLAVLSPVFGRELVAQKDIYSTLDVQTALKVARGESVETAKGETLEVKTWSIPLVHRDAMKGSRN-GKELSYKERMQQRLKRDAARVAAINSRLELAVNGIKRXXXXXXXXXXXXXXXXXXXSPVVSGMDQGSGEYFSRIGVGSPQRDQLMVLDTGSDVSWIQCNPCSDCYQQADPIYTPALSSTFKLVGCQASLCQQLDVSGCSRNGSCMYQVSYGDGSYTLGNFATETLTLGGTTVPNMAIGCGHDNEXXXXXXXXXXXXXXXXXXFPSQLTDESGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVVAPMLKNSRLDTFYYVSLSGISVGGKMLSISDSVFGIDASGNGGVIVDSGTAVTRLQTAAYDSLRDAFRAGTKNLPSTDGVSLFDTCYDLSSKDSVDVPTVGFHFPGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGTRVSFDRVNNQVGFAVNKC
A9NUE4_______________MQTLAAVLLFLAALSPVFARELSTQKDIYSTLDVQATLRVARGEVVQPAKEETLEIKPWSIPLVHRDAMKGNSNKNNELSYAERMQQRLKRDAARVAAINSRLELAVNGIKRSSLKPDSSSSFTMAESDFQSPVVSGMDQGSGEYFSRIGVGAPRRDQLMVLDTGSDVTWIQCEPCSDCYQQSDPIYNPALSSSYKLVGCQANLCQQLDVSGCSRNGSCLYQVSYGDGSYTQGNFATETLTLGGAPLQNVAIGCGHDNEGLFVGAAGLLGLGGGSLSFPSQLTDENGKIFSYCLVDRDSESSSTLQFGRAAVPNGAVLAPMLKNSRLDTFYYVSLSGISVGGKMLSISDSVFGIDASGNGGVIVDSGTAVTRLQTAAYDSLRDAFRAGTKNLPSTDGVSLFDTCYDLSSKESVDVPTVVFHFSGGGSMSLPAKNYLVPVDSMGTFCFAFAPTSSSLSIVGNIQQQGIRVSFDRANNQVGFAVNKC

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1588	11		88		0.923564
1820	6			90	0.997544
1822		93	6		0.999264
1824		6		93	0.999264
1825			6	93	0.999364
1862	5	2	91		0.996531
1863		8	91		1.0
1864	2	5		91	0.996531
1865	2	2	5	88	0.990219
1866		2		91	0.996531
1879	92	2	5		0.991359
1966		3		90	0.997073
2006		93	6		0.999532
2017	7	3	89		0.998606
2018	7	85	3		0.996721
2045	91	8			0.999807
2046	91	8			0.999807
2054		90		9	0.999872
2055		90	9		0.999872
2056	9	90			0.999872
2057			9	90	0.999872
2061	9		90		0.999872
2065		9	90		0.999872
2066		9	90		0.999872
2068	9			90	0.999872
2069	90		9		0.999872
2070			9	90	0.999872
2072	90	9			0.999872
2074		9		90	0.999872
2076	9		90		0.999872
2078	90		9		0.999872
2143		12		87	0.992554
2144	12			87	0.992554
2145			12	87	0.992554
2146		12		87	0.992554
2148	12	87			0.992554
2152		87		12	0.992554
2164	80	20			0.995493
2165	80	20			0.995493
2166		20	80		0.995493
2167		20		80	0.995493
2168		40	60		1.0
2169	80	20			0.995493
2170	60	20		20	0.99255
2171		25	75		0.996473
2172	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain