SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15057

Length: 3444 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15057
ATGGGGATATTATTTATTTAAAACTAAATTTTCTGATAATTTTTCGATATAAATAAATTCCCCAAATTATTAACCAGCAGAGCCCGATAGTTTGACGGTGGGGAAAATAAGATCGGAAAAGACGAGATGCAGTCACCTCGCCTACACAGCACGTCGTGACGCTTGGCTGTCACTATATTTATCTGTAGCGTTTTCACCTCTCCTATTTTCGTAAAGAAAAAGCGGCCCGATGCCCATATCCACAAATAAAAACCATTCTCTTCTCAACGCATTCGCCCACTGATCAATCCCTCGCAGCTGTACACGGCAGATGGACGATGCCACAGCCCTAGTACGTGATTGTCGCAGGCCATGAATTACTGGTATTACGCGCTCGGCTCTACGGATTAAGAGTGTCCTGCTTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAAATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAAATAATGGTTCGGTGGCTTTCACGTTTCTTTAATTACTTGGATCGTTACTTCATTGCAAGGCGTTCTCTTCCTGCACTAAATGAAGTTGGTCTCATGTGCTTCCGTGATCTGGTTTACCAAGAAATTAAGAATAATGTAAGGGATGCTGTGATTACTCTGATTGATAGGGAACGCGAAGGGGAGCAAATTGATCGAGCTTTGCTGAAAAATGTTCTGGGCATCTTTGTGGAAATTGGGATGGGTAACATGGATGCTTATGAGAATGACTTTGAGTCAGCGATGTTGGATGACACTGCTTCTTACTATTCTCGAAAGGCTGCATCATGGATATTAGAAGATTCTTGTCCGGATTATATGCTTAAGGCTGAGGAGTGTCTGAAACGAGAAAAAGAAAGAGTTTCCCATTATTTACATACTACAAGTGAACAAAAGTTGCTGGAAAAAGTACAAAATGAACTGCTTTCCCAGTATGAGAGTCAACTTCTAGAGAAGGAGCATTCAGGGTGCCATGCCTTGCTAAGAGATGACAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACCTAAAGGCTTGGAACCCGTGGCTCAAATTTTCAAACAGCATGTTACTGGTGAGGGTACATCATTAGTCAAGCATGCAGAAGATGCGGCAAGCAATAAGAAGGCAGAAAAAAAGGATGTAGTTGGTGCACAAGAGCAGGCATTTGTCAGGAAAGTTATTGAACTGCATGACAAGTACTTGCAATATGTGAACAAATGTTTTAAGAACCACTCCCTTTTCCATAAGGCACTGAAGGAAGCGTTTGAAGTATCTTGTAACAAGGGAGTTGCAGGAAGCACAAGTGCAGAATTATTGGCAACAGTTTGTGATAACATCTTGAAGAAGCGTGGTAGTGAAAAATTAAGTGATGAAGATATTGAGGATACGCTTGAAAAGGTTGTCAAGCTTCTGGCATACATTAGTGATAAAGATTTGTTTGCAGAATTTTACAGGAAAAAGCTTGCACGCAGGCTTCTATTTGATAAAAGTGCAAATGATGATCATGAAAGAAGTATATTGACAAAATTGAAGCAACAGTGTGGAGGCCAGTTTACTTCTAAAATGGAGGGAATGGTTACTGATTTAACTTTAGCAAGGGAGAATCAAACAAATTTTGAGGAATATCTTAATGGCAACCCACTTGCACATCCCGGAATAGATTTGACTGTGACTGTTTTGACAACTGGATTTTGGCCAAGTTACAAGTCATTTGACCTTAATCTACCTGCTGAGATGGTTAAATGTGTTGAGGTGTTCAAAGAGTTTTATCAAACAAAAACTAAACATCGGAAGCTTACATGGATATATTCTTTGGGAACCTGTAATATTATTGGGAAGTTTGATCCTAAGCCAATGGAACTTATTGTGACAACTTACCAGGCATCTGCACTTCTGCTGTTCAATGCATCAGAGAGGCTAAGTTACTCTGAAATCAAGTCTCAGTTGAATTTAACTGATGAAGATATTGTCAGATTGCTGCACTCCCTTGCATGTGCAAAATACAAAATCCTCAACAAAGAACCAAACACAAAAACTGTGGCACAAACAGATTATTTTGAATTCAACGCAAAATTTACAGACAAAATGAGGAGAATAAAGATTCCTCTTCCACCAGTGGACGAGAAGAAAAAAGTTATCGAGGATGTAGATAAAGATCGACGTTATGCTATTGACGCATCAATTGTAAGAATCATGAAGAGCCGAAAAGTTTTATCTCACCAGCAGCTAGTGATGGAGTGCGTTGAGCAACTGGGACGGATGTTCAAGCCTGATTTCAAGGCAATCAAGAAGAGAATTGAAGATCTAATTACAAGGGAATACTTGGAGAGGGACAAAGATAATCCTAATATGTTCAGATATTTGGCCTGAATTGTGGGTGCAATGTTGTTTGTACAAGCTTTTTAAAGCTTGCTCATGCAGCAATTCATCTATTGAATTTCTCCTAGGTGCTTGTATTTATATTATATAGTGCTTCCAATGTTGGCGGTTGTAGACATCCTCAGAAATGGGTTTGGCCGCCATGAGGGTTTCCACAGAAGGATATCATGAAACTTCACTGTTTTCTGATATGGTCACTGAGCTTTTTGTTTTTTAATTTATTTGGATGCTTGGTAAAGAGGCATGTGGTGCAGGTGGAACTTGCACCTGTTTACCCTTTGTTGAAACAGTGAAGGATGCAGTGTCGACAATTCCCAAGTTATTTTTCTCCAATTCATATGATTGGATATGCGGTAATCCAGCAAGTTCTATGTTTTGATTATGCTCAAATGTCATAACTGAATTTTATTCAGTAAAATATCTGATTCTTTTTCCAATTAGATTAAATTGATCGTCTTCGCTGTGAAGTTCTCTAATGACTGGAACTCTATCAAGTGGTTCTGCAATGATCATAGAATAAGTTTAGAGGTTATTGTGCAGCATTTGCATATGTCAGCTTCGACTTCAATCTCTGGTCATTATGTAAGCAGAATGCAGGACCCAAACTGAGGGAGTCTCCTTGGGCACAAGGAATTGGCAGCTACTTGTTCCTTTTCAATGGCATATGGTTTCCTTTCAACTCATTTATCTTTGGGAAACAGAGCAGTGGGCTTGTTTGATAGCATAAACTAGTGTGCTTGGTAGTACTCGTAGGATTTTAGAAGGT

Ace file of the UniGene sp_v1.1_unigene15057

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CUL1; cullin 1	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	92%
Blast2go	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Cullin, N-terminal	IPR001373	-	92%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	92%
Blast2go	Cullin, conserved site	IPR016157	-	92%
Blast2go	Cullin homology	IPR016158	-	92%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	92%
Blast2go	Cullin protein, neddylation domain	IPR019559	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg:

Fln protein: MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKIMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLDDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVSHYLHTTSEQKLLEKVQNELLSQYESQLLEKEHSGCHALLRDDKVDDLSRMYRLFCRIPKGLEPVAQIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNKCFKNHSLFHKALKEAFEVSCNKGVAGSTSAELLATVCDNILKKRGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA*

Protein Length: 746

Fln nts: ATGGGGATATTATTTATTTAAAACTAAATTTTCTGATAATTTTTCGATATAAATAAATTCCCCAAATTATTAACCAGCAGAGCCCGATAGTTTGACGGTGGGGAAAATAAGATCGGAAAAGACGAGATGCAGTCACCTCGCCTACACAGCACGTCGTGACGCTTGGCTGTCACTATATTTATCTGTAGCGTTTTCACCTCTCCTATTTTCGTAAAGAAAAAGCGGCCCGATGCCCATATCCACAAATAAAAACCATTCTCTTCTCAACGCATTCGCCCACTGATCAATCCCTCGCAGCTGTACACGGCAGATGGACGATGCCACAGCCCTAGTACGTGATTGTCGCAGGCCATGAATTACTGGTATTACGCGCTCGGCTCTACGGATTAAGAGTGTCCTGCTTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAA_-_ATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAAATAATGGTTCGGTGGCTTTCACGTTTCTTTAATTACTTGGATCGTTACTTCATTGCAAGGCGTTCTCTTCCTGCACTAAATGAAGTTGGTCTCATGTGCTTCCGTGATCTGGTTTACCAAGAAATTAAGAATAATGTAAGGGATGCTGTGATTACTCTGATTGATAGGGAACGCGAAGGGGAGCAAATTGATCGAGCTTTGCTGAAAAATGTTCTGGGCATCTTTGTGGAAATTGGGATGGGTAACATGGATGCTTATGAGAATGACTTTGAGTCAGCGATGTTGGATGACACTGCTTCTTACTATTCTCGAAAGGCTGCATCATGGATATTAGAAGATTCTTGTCCGGATTATATGCTTAAGGCTGAGGAGTGTCTGAAACGAGAAAAAGAAAGAGTTTCCCATTATTTACATACTACAAGTGAACAAAAGTTGCTGGAAAAAGTACAAAATGAACTGCTTTCCCAGTATGAGAGTCAACTTCTAGAGAAGGAGCATTCAGGGTGCCATGCCTTGCTAAGAGATGACAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACCTAAAGGCTTGGAACCCGTGGCTCAAATTTTCAAACAGCATGTTACTGGTGAGGGTACATCATTAGTCAAGCATGCAGAAGATGCGGCAAGCAATAAGAAGGCAGAAAAAAAGGATGTAGTTGGTGCACAAGAGCAGGCATTTGTCAGGAAAGTTATTGAACTGCATGACAAGTACTTGCAATATGTGAACAAATGTTTTAAGAACCACTCCCTTTTCCATAAGGCACTGAAGGAAGCGTTTGAAGTATCTTGTAACAAGGGAGTTGCAGGAAGCACAAGTGCAGAATTATTGGCAACAGTTTGTGATAACATCTTGAAGAAGCGTGGTAGTGAAAAATTAAGTGATGAAGATATTGAGGATACGCTTGAAAAGGTTGTCAAGCTTCTGGCATACATTAGTGATAAAGATTTGTTTGCAGAATTTTACAGGAAAAAGCTTGCACGCAGGCTTCTATTTGATAAAAGTGCAAATGATGATCATGAAAGAAGTATATTGACAAAATTGAAGCAACAGTGTGGAGGCCAGTTTACTTCTAAAATGGAGGGAATGGTTACTGATTTAACTTTAGCAAGGGAGAATCAAACAAATTTTGAGGAATATCTTAATGGCAACCCACTTGCACATCCCGGAATAGATTTGACTGTGACTGTTTTGACAACTGGATTTTGGCCAAGTTACAAGTCATTTGACCTTAATCTACCTGCTGAGATGGTTAAATGTGTTGAGGTGTTCAAAGAGTTTTATCAAACAAAAACTAAACATCGGAAGCTTACATGGATATATTCTTTGGGAACCTGTAATATTATTGGGAAGTTTGATCCTAAGCCAATGGAACTTATTGTGACAACTTACCAGGCATCTGCACTTCTGCTGTTCAATGCATCAGAGAGGCTAAGTTACTCTGAAATCAAGTCTCAGTTGAATTTAACTGATGAAGATATTGTCAGATTGCTGCACTCCCTTGCATGTGCAAAATACAAAATCCTCAACAAAGAACCAAACACAAAAACTGTGGCACAAACAGATTATTTTGAATTCAACGCAAAATTTACAGACAAAATGAGGAGAATAAAGATTCCTCTTCCACCAGTGGACGAGAAGAAAAAAGTTATCGAGGATGTAGATAAAGATCGACGTTATGCTATTGACGCATCAATTGTAAGAATCATGAAGAGCCGAAAAGTTTTATCTCACCAGCAGCTAGTGATGGAGTGCGTTGAGCAACTGGGACGGATGTTCAAGCCTGATTTCAAGGCAATCAAGAAGAGAATTGAAGATCTAATTACAAGGGAATACTTGGAGAGGGACAAAGATAATCCTAATATGTTCAGATATTTGGCCTGA___ATTGTGGGTGCAATGTTGTTTGTACAAGCTTTTTAAAGCTTGCTCATGCAGCAATTCATCTATTGAATTTCTCCTAGGTGCTTGTATTTATATTATATAGTGCTTCCAATGTTGGCGGTTGTAGACATCCTCAGAAATGGGTTTGGCCGCCATGAGGGTTTCCACAGAAGGATATCATGAAACTTCACTGTTTTCTGATATGGTCACTGAGCTTTTTGTTTTTTAATTTATTTGGATGCTTGGTAAAGAGGCATGTGGTGCAGGTGGAACTTGCACCTGTTTACCCTTTGTTGAAACAGTGAAGGATGCAGTGTCGACAATTCCCAAGTTATTTTTCTCCAATTCATATGATTGGATATGCGGTAATCCAGCAAGTTCTATGTTTTGATTATGCTCAAATGTCATAACTGAATTTTATTCAGTAAAATATCTGATTCTTTTTCCAATTAGATTAAATTGATCGTCTTCGCTGTGAAGTTCTCTAATGACTGGAACTCTATCAAGTGGTTCTGCAATGATCATAGAATAAGTTTAGAGGTTATTGTGCAGCATTTGCATATGTCAGCTTCGACTTCAATCTCTGGTCATTATGTAAGCAGAATGCAGGACCCAAACTGAGGGAGTCTCCTTGGGCACAAGGAATTGGCAGCTACTTGTTCCTTTTCAATGGCATATGGTTTCCTTTCAACTCATTTATCTTTGGGAAACAGAGCAGTGGGCTTGTTTGATAGCATAAACTAGTGTGCTTGGTAGTACTCGTAGGATTTTAGAAGGT

Fln Alignment:

sp_v1.1_unigene15057___MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKIMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLDDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVSHYLHTTSEQKLLEKVQNXXXXXXXXXXXXXXHSGCHALLRDDKVDDLSRMYRLFCRIPKGLEPVAQIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNKCFKNHSLFHKALKEAFEVSCNKGVAGSTSAELLATVCDNILKKRGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA
B8LQB2_______________MTMSERKIIELEAGWEFMQKGITKLKNILEGNPEQQINSEEYMMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVERWGNHKIMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVAHYLHSSSEQKLLEKVQNELLSQYESQLLEKEHSGCHALLRDDKVDDLSRMYRLFYRIPKGLEPVSLIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNECFMNHSLFHKALKEAFEVFCNKGVAGSTSAELLATFCDNILKKGGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNENPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRMEDLITREYLERDKDNPNMFRYLA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1468	10		90		0.90298
1470		90	10		0.90298
1471	90		10		0.90298
2070	10			90	0.90298
2071	10	90			0.90298
2072	90			10	0.90298
2077	90		10		0.90298
2176			14	85	0.993533
2194		85		14	0.993533
2208	83		16		0.994512
2256		12		87	0.992554
2339		11		88	0.923564
2355		11		88	0.923564
2356		12		87	0.992554
2360	87		12		0.992554
2361	87	12			0.992554
2368			85	14	0.993533
2847	89		10		0.999919
2889	11			88	0.923564
2890		11		88	0.923564
2891	11			88	0.923564
2892			11	88	0.923564
2893			11	88	0.923564
2894		11		88	0.923564
2895	87	12			0.992554
2924		18		81	0.999994
2927		18	81		0.999994
2931	18	81			0.999994
2932	81	18			0.999994
2933		18	81		0.999994
2934			81	18	0.999994
3190		83		16	0.994512
3192			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain