SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15037

Length: 1514 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aquaporin n=4 Tax=Picea RepID=O65045_PICMA	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aquaporin	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	90%
Blast2go	transporter activity	GO:0005215	Molecular Function	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG2

Fln msg:

Fln protein: MAKEGGKEVEQQGYVAKDYTDPPPAALFDVGEFKLWAFYRAVIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDEYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKSWDDQWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV*

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTATGGGGACATTACTGACCACTCCAGTTTTTTTCCTATTCCTTTTTTCTGGTGCTATTGCTTGTCTCTCTGAGAACTTTCAGTTTTGTTCAAGAAAAAGCT_-_ATGGCTAAGGAAGGTGGCAAAGAAGTTGAGCAGCAGGGATATGTGGCCAAGGACTACACAGATCCCCCTCCAGCAGCTCTGTTTGATGTTGGAGAGTTTAAGTTATGGGCCTTCTACCGTGCAGTCATAGCAGAGTTCATTGCCACTTTGCTGTTTCTGTATATAACAGTGGCCACTGTCATTGGTCACAAGAGAAACCAGGCTGCCTGTGGCAGTGTTGGGCTCCTGGGCATTGCCTGGGCTTTTGGGGGAATGATCTTTGTGCTGGTCTACTGCACTGCTGGTATTTCAGGTGGGCATATCAACCCTGCTGTGACTTTTGGGCTGTTTTTGGCAAGGAAGGTGTCCTTGCCTAGGGCAGTTCTCTACATGGTGGCCCAGTGTTTGGGAGCCATATGCGGATGTGGGCTGGTGAAGGCGTTCCAGAAATCCTACTACGACGAATATGGAGGCGGAGCCAACTCTGTGGCTCACGGCTACACTAAAGGCGTGGGGCTGTCTGCTGAGATCATCGGCACTTTCGTCTTGGTTTACACTGTTTTCTCTGCCACTGATCCTAAGCGCAATGCTCGGGACTCCCATATCCCTGTATTGGCTCCATTGCCTATTGGGTTTGCAGTATTCATGGTGCATTTGGCGACCATCCCCATTACTGGCACAGGCATCAACCCTGCCAGGAGCTTCGGGGCAGCTGTCATCTATGGCCACCAAAAGTCCTGGGATGACCAGTGGATTTTCTGGGTAGGCCCATTCCTTGGAGCAGCAGGAGCAGCAGCTTATCATCAGTACATTCTGAGAGCAGGGGCCATCAAGGCCCTGGGATCCTTCCGCAGCAACCCCCATGTTTAG___AGCTTCTTCTCTTGTAAGAGGCCCTTGTAATAAAGCATACTGCTGCTGATTCTGTTGAAAGTCCAGGGTGATGATGAGGAGCTCGTTTTTGCCATGAAATAGCTCTCAGAAACCAACTTTGTAGTCACAATAGCAGCAGCTGCAACAGAATGTGTAGAAAGATGAGTTATTTTATTAGTGAGAGTTTTCTTGACATGTTACATAGTGATATGGAGTTTTTTCTTTTTGTTTTTTAGTGGAGGTGGGAGGGATGTTCATATTTTTCTTTTGCCTCCCTTGGGGAGGAGTGTATCCTGATGATTTCTGTCACAGATTTTCTTCTGTACTTGTCACGTTAGCAGTATAAAACATTTTTTACATCGTGCTTTTTTCGGAAAATGAGTGCCGAAATTATTGTTCTTGTGGTGTGTTTGGTTTCTCGATTTTGGGAACAAACAAATACAAAATCCGAGCTGCAGCCATTATCTCTCTTTGAAAGAGAAGGCATCTCTTCGACAATATTTGCTGTGTGTTTTTATTTTTATTTTTAATTTTATTTACAGTATGTTT

Fln Alignment:

sp_v1.1_unigene15037___MAKEGGKEVEQQGYVAKDYTDPPPAALFDVGEFKLWAFYRAVIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDEYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKSWDDQWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV
A9NNG2_______________MAKEGGKEVEQQGFAAKDYKDPPPAALFDVSEFKLWAFYRAIIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDQYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKIWDEHWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
946		97		2	0.99966
960		2		97	0.927345
1058		98		1	0.916885
1113	99		0		0.912736
1126	92	1			1.0
1127			92	1	1.0
1410	85		14		0.993533
1433		83		16	0.994512
1434			16	83	0.994512
1437		83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1477	1494	TTTTTA TTTTTA TTTTTA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain