SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15035

Length: 1475 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15035

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-prolyl cis-trans isomerase d, ppid, putative (EC:5.2.1.8); K05864 peptidyl-prolyl isomerase D (cyclophilin D) [EC:5.2.1.8]	-	-	66%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase CYP40; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	79%
Blast2go	floral meristem determinacy	GO:0010582	Biological Process	79%
Blast2go	vegetative phase change	GO:0010050	Biological Process	79%
Blast2go	binding	GO:0005488	Molecular Function	79%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C566

Fln msg: Separated hits, possible frame ERROR between 427 and 429,

Fln protein: MRCYLDISIGGELEGRIVVELYADIVPKTAENFRALCTGEKGIGAHTGAPLHYKGVPFHLVTKGFMIQGGDISAHNGKGGESIYGLNFEDENFLKKHQRKGMLSMxxNSGPNTNGSQFFITMARTSHLDGKHVVFGKVIKGRGVIRAIEQSPVGNNDCPLNDVIIADCGEIPEGADDGVLNFFKDGDKYLDWPLDLDEKPSELSWWIAAVESAKSFGNENFKNGNYKMALRKYRKAMYYLDNCWDSEELDEDKSHRLRKIKSQILTNSSVCKLRLGDAEGALVDIEHAIQTGEDNTKAFFRQGQAHMALNDVEAAVLSFTKALEFAPNDVAIKKEMAAAKKKIAEKREQERKAFSRLFQ*

Protein Length: 361

Fln nts: CATGGCCTGGTAATGAAGGTGACTTGGTGGAGTATGACACTCGTATGGCTATATAAAGATATCCTGGTACGTGGGTTCAAGGAGTTTAAGGGCCTTCTTCTCTTCAGAA_-_ATGAGGTGCTATTTAGATATAAGTATTGGAGGAGAGTTAGAGGGGAGGATTGTGGTGGAACTTTATGCAGACATAGTGCCAAAGACTGCCGAGAATTTCAGGGCGCTGTGTACGGGAGAGAAAGGAATAGGCGCTCATACTGGTGCTCCTCTTCATTACAAAGGAGTCCCCTTTCATCTTGTGACGAAAGGTTTTATGATACAAGGGGGAGACATTTCTGCTCATAATGGTAAAGGTGGGGAGTCGATTTATGGATTGAATTTTGAGGATGAAAATTTTCTCAAGAAGCACCAACGGAAAGGTATGTTGTCAATGGCxxxCAACTCTGGACCTAATACGAATGGGTCGCAGTTTTTTATCACTATGGCAAGGACCTCTCATCTGGATGGAAAACATGTGGTATTTGGAAAGGTAATAAAAGGTAGAGGAGTTATAAGGGCAATTGAGCAGAGCCCTGTTGGCAACAATGATTGTCCCTTGAATGATGTTATAATTGCAGACTGTGGCGAGATACCAGAAGGTGCAGACGATGGTGTTCTTAACTTCTTTAAAGATGGAGACAAATACCTAGATTGGCCACTTGATTTGGATGAGAAACCTTCAGAGCTGTCGTGGTGGATAGCTGCAGTGGAGTCCGCTAAAAGTTTTGGAAATGAAAATTTCAAGAATGGGAATTACAAGATGGCATTAAGAAAATACAGGAAGGCTATGTACTATCTTGATAATTGTTGGGACAGTGAAGAGCTTGATGAGGATAAAAGCCACCGGTTACGGAAGATAAAGTCACAAATCCTGACAAATAGTTCTGTTTGCAAGTTAAGATTAGGAGATGCCGAGGGAGCTCTAGTGGATATTGAGCATGCAATTCAGACTGGTGAGGATAATACCAAAGCTTTCTTTCGTCAGGGTCAGGCACATATGGCCCTGAATGATGTGGAGGCTGCTGTTTTAAGCTTTACAAAAGCTCTTGAATTTGCACCCAATGATGTGGCAATAAAGAAGGAGATGGCAGCTGCAAAGAAGAAAATTGCTGAGAAGCGTGAACAGGAGCGCAAAGCTTTTTCTAGGTTGTTCCAGTGA___CTGATTTTCAATTATGGTTCAAGGATAGCAGAGGTAAGTCAGCAGGAGTTGCTTCGTTGTTCTTCTACTGAATCTTTAAGCAGTCTTTGTGGAaTGGACAGCATGATTTTTTGTAAAAAAGACTAGTAATATCCTAAACTTGAAACTAGTTCCAGTCATAAGAAAAAGAACACATTATAATTTTGTTGATGAGCTGATGAAGCCTAATGGCAAATGCAATAATGAAATCTAAAAAATGCGAGCAAGAACGCATTGTCAGATATTAGAAGGATGTTGACATGGATTTAT

Fln Alignment:

sp_v1.1_unigene15035___RCYLDISIGGELEGRIVVELYADIVPKTAENFRALCTGEKGIGAHTGAPLHYKGVPFHLVTKGFMIQGGDISAHNGKGGESIYGLNFEDENFLKKHQRKGMLSMAxNSGPNTNGSQFFITMARTSHLDGKHVVFGKVIKGRGVIRAIEQSPVGNNDCPLNDVIIADCGEIPEGADDGVLNFFKDGDKYLDWPLDLDEKPSELSWWIAAVESAKSFGNENFKNGNYKMALRKYRKAMYYLDNCWDSEELDEDKSHRLRKIKSQILTNSSVCKLRLGDAEGALVDIEHAIQTGEDNTKAFFRQGQAHMALNDVEAAVLSFTKALEFAPND
Q9C566_______________KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMAxNSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDGICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEKALQFEPND

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
961		20		80	0.995493
979	14	85			0.993533
1085	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain