SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15015

Length: 1678 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15015 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L4 n=1 Tax=Prunus armeniaca RepID=RL4_PRUAR	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein l4 l1	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	87%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	87%
Blast2go	nucleolus	GO:0005730	Cellular Component	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK49

Fln msg:

Fln protein: MAATAAARPLVSVLNVESEGAEGGSDAVPLPDVMKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSVFGGFEKESLQKKGYVLPRAKMVNSDLGRIVNSDEIQSVVKPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLAEEQRAKAKKEKLDKKRKEPKENKDEIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ*

Protein Length: 408

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTCCGTCGTGACCTTGGCTGTCAGTCGCGTTTGTTTTATTCATATAGCAGAGTTTCTGCACCGAGGGTTTTGGACAGAAGAAACCTTCCATCTTAGCTTTTAGGTTTTCATTCACCATTACCATTAGCAGAGCATCA_-_ATGGCGGCCACTGCAGCAGCTCGTCCTCTGGTTTCAGTGCTAAATGTTGAAAGCGAAGGCGCAGAAGGGGGCAGCGATGCCGTTCCCCTTCCGGACGTGATGAAGGCGTGCATCAGGCCCGACATTGTCGAATTCGTGCACGCAAACATGGCAAAAAATAAACGCCAACCTTACGCAGTCAGCAAGAAGGCCGGTCATCAGACTTCCGCAGAGTCATGGGGAACGGGGCGGGCGGTTTCCCGAATCCCCCGTGTTGCTGGAGGCGGAACGCACAGAGCTGGCCAGGGAGCCTTTGGCAACATGTGTCGTGGCGGACGGATGTTCGCTCCCACGAAAATCTGGCGAAAATGGCACCGGAAAATCAACTTAAACCAGAAAAGACATGCGGTGGTTTCTGCCCTAGCGGCCTCTGCGATCCCCGCCCTTGTCATGGCTCGAGGTCACAGGATCGAGTCCGTCCCCGAGCTGCCGCTGGTTCTCAGCGATGGCGTCGAAGGGGTAGAGAAAACCTCAGCTGCTTTGAAGGTTTTGAAGAAGGTGGGAGCTTTTGCTGACGTCGAAAAGGCCAAGAAAAGTCACAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGGCGTTATATTTTACGCAAAGGTCCTCTGATTGTTTATGCCACTGAAGGGGCCAAGCTTGTCAAGGCTTTCAGGAATATTCCAGGTGTGGAAATTGCTTGTGTCGATAGATTGAATCTGCTGAAGCTTGCTCCTGGAGGGCATTTGGGTCGTTTTATTATTTGGACAAAGTCTGCTTTTGAGAAGCTTGATAGCGTTTTCGGGGGTTTTGAAAAGGAGTCCCTGCAAAAGAAGGGATACGTTCTACCTCGTGCGAAGATGGTCAATTCGGATCTGGGTAGGATTGTGAATTCTGATGAAATTCAGTCTGTTGTGAAACCCATCAACAGGGAAATCAAGCGGAAGCCGCTCAAGAAGAATCCACTTAAGAACTTGGGTGCTCTTCTGAAGCTCAACCCACATGCGAAAACTGCCAGGCGAATGGCACTTTTGGCTGAGGAACAGCGTGCGAAGGCCAAGAAGGAGAAGCTTGACAAGAAGAGAAAGGAACCAAAGGAAAACAAGGATGAAATAAAGGCAGCGGGAAAAGCTTGGTACAAAACCATGGTTTCAGATAGTGACTACACGGAGTTTGAGAATTTCTCTAAATGGCTTGGTGTGACACAGTAA___AGCAAGTTGGTCCATAAGAAAATGAATTTTATCATTAGTTGAAATCAAGGCTAGTCTTTGGGTTATGAGTAATTACGCTGGTAATCTAAATTTTGTTTCTGACAATTACAGTAGAGTTTGCTTTGTGATTTTGAATTTTTGTGGCCTAATATTTTTTCAATTTTAACATTCTATTTTGACGGTGAGCCAACCATTTTGTAGTTGCTATGTTCTGTAGTGTCAGGTCCTTGGTGTTTATGACTATTTATGATAAACAAAACAGTGGCTGAGATCCTTGCCAACTTTTTAGATTT

Fln Alignment:

sp_v1.1_unigene15015___PLVSVLNVESEGAEGGSDAVPLPDVMKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYILRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSVFGGFEKESLQKKGYVLPRAKMVNSDLGRIVNSDEIQSVVKPINREIXXXXXXXXXXXXXXXXXXXXPHAKTARRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ
B8LK49_______________PLVSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVRPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLADEQRAKAKQEKLDKKRKEPKENKDAIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
1221	33		66		0.997452
1531			87	12	1.0
1570	3	1		94	0.999726
1571	3		1	94	0.99975
1573		1	3	94	0.99975
1574	2			97	0.962263
1578	3			96	0.999965
1580		93	3	2	0.998974
1581	88	6	2		1.0
1582	90	5	1		1.0
1583	87	9		1	1.0
1585	1	83	1	9	1.0
1587	12	86			1.0
1588	4			95	0.999987
1589	4	85	9		1.0
1590	11	1	85	1	1.0
1592		4		95	1.0
1593	2	4	92		0.999999
1596		2	97		0.956062
1597	91	6	2		1.0
1598	92	5		2	1.0
1599	97		2		0.960269
1600	5	92	2		1.0
1601			7	92	1.0
1602	2	92	5		1.0
1606	5		2	92	1.0
1607	94	5			1.0
1608		1	5	93	1.0
1610		6		93	1.0
1613	95		4		0.999986
1614	3			96	0.983282
1615	92		6	2	0.999991
1617	94	6			0.999998
1620	82	13		4	1.0
1623		82	8		0.999136
1624			60	34	1.0
1625	4	52		30	1.0
1627	54	36		4	1.0
1628		59	40		1.0
1629	9		9	77	0.999071
1630		10	50		1.0
1631	45	40	10		1.0
1634			50	10	1.0
1635		84	15		1.0
1636		78	5	5	0.999769
1638	61	5		33	1.0
1639			84	15	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain