SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15003

Length: 1730 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15003

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI	-	-	91%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	plastidic aldolase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-bisphosphate aldolase.	EC:4.1.2.13	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	91%
Blast2go	Pentose phosphate pathway	00030	91%
Blast2go	Fructose and mannose metabolism	00051	91%
Blast2go	Methane metabolism	00680	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of terpenoids and steroids	01062	91%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	91%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	glycolysis	GO:0006096	Biological Process	0.0	91%
Blast2go	fructose-bisphosphate aldolase activity	GO:0004332	Molecular Function	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fructose-bisphosphate aldolase, class-I	IPR000741	-	0.0	91%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC9

Fln msg:

Fln protein: MAAASGAVLKTPLSLRKSEWMGQALRPTSVNTSAQFQSYNATALSVRAGAYSEELIKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGAILFEETLYQSSTEGKKIVDILVQQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAEYYKQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIERTNEVALKVWSEVFFYLAENNVLFEGILLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVDAAQKILLVRAKANSLAQLGKYSAEGESAESKEGMFVKGYTY*

Protein Length: 400

Fln nts: GGGATAAATAGTAGGCAGCTCCATCGGATGGGGACACGCGAGACTTGCCCGTCAAAGGGAAAAGAAGTGCCGATTGCATTGCTCCTGCGACCTGATCTCATTCCCTATTGTCTGTTATTTCAATTCCTGCA_-_ATGGCGGCCGCTAGTGGAGCCGTGCTGAAGACACCTCTCAGCCTGAGAAAATCCGAATGGATGGGTCAGGCCCTCAGGCCGACGTCGGTGAATACTTCGGCCCAGTTCCAATCCTACAACGCTACTGCTCTCAGCGTCCGGGCCGGGGCTTACAGCGAAGAGTTGATCAAGACGGCGAAAACAGTGGCGTCTCCCGGGAGAGGCATCCTGGCGATGGACGAGTCCAACGCCACCTGCGGGAAACGGCTGGCGTCCATCGGGCTTGAGAACACGGAGGCGAACCGACAGGCATACAGGCAGCTGCTCGTCAGCGCGCCGGGTCTCGGACAGTACATCTCCGGCGCCATTCTCTTCGAGGAAACTCTGTACCAGTCCAGCACCGAAGGCAAGAAGATCGTAGACATCCTCGTGCAGCAGAACATAGTGCCCGGCATCAAAGTCGACAAGGGTCTGGTTCCTTTGGCTGGTTCAAACGACGAATCTTGGTGCCAAGGCCTAGACGGCCTCGCATCAAGGTGCGCTGAGTATTATAAGCAAGGAGCTCGCTTCGCCAAATGGCGTACAGTTGTGAGCATTCCCAACGGCCCCTCTGCTCTGGCCGTGAAAGAAGCTGCATGGGGTCTCGCCCGCTACGCGGCAATTGCTCAGGACAACGGTCTGGTTCCCATAGTGGAGCCAGAGATCCTGTTGGATGGAGAACACGGCATTGAGAGGACTAACGAAGTAGCGCTGAAGGTGTGGTCCGAGGTGTTCTTCTACTTAGCAGAGAACAACGTGCTGTTCGAAGGCATTCTGCTGAAGCCGAGCATGGTTACCCCTGGTGCCGAGTGTAAGGAGAGGGCCAGTCCCGAAACTGTTGCCCAATATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTGGGCAATCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAAACACTTGCCTCAAGACATGGGGTGGCAGGCCCGAGAACGTGGACGCAGCCCAGAAGATCCTGCTGGTTCGGGCAAAGGCCAACTCCCTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAA___GCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGTTACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTGAAAAACATAGTTTTGCTCTATTTGAGCTTTGCTATATAGTTAGGCGTTTCATGCTGTTTTTGTAAGGTCACTATAATATGAACTTGTGTATTACATAATTGAGACAAGGGGAGGTCGTGGTCGATAGCTACCAGAATTGTATTTTAACTCCAAAATCGAAACACATGTTCAGCTTATGATGCGTATTTTCAGCTTGAATTCAGTGTTTTCTTTTCTTAATAAATAAATTCATGGATAAATGATCCTTCAGCAGAAAAGAA

Fln Alignment:

sp_v1.1_unigene15003___MAAASGAVLKTPLSLRKSEWMGQALRPTSVNTSAQFQSYNATALSVRAGAYSEELIKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGAILFEETLYQSSTEGKKIVDILVQQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAEYYKQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIERTNEVALKVWSEVFFYLAENNVLFEGILLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVDAAQKILLVRAKANSLAQLXXXXXXXXXXXXXXXMFVKGYT
A9NUC9_______________MAAATGAVLKTALSLRKSEWMGQALRPTSVNTSAQSQSYNATALSVRAGAYSEELIKTAKRVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRQLLVSAPGLGQYISGSILFEETLYQSTTDGKKMVDVLVQQDIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRCAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGLERTFEVALKVWAEVFFYLAENNVLFEGILLKPSMVTPGAECKDRASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWAGRPENVDAAQKILLVRAKANSLAQLGKYSAEGESAESKEGMFVKGYT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
719		80		20	0.999996
1423	93		1		1.0
1646		6		93	0.999999
1690	66		33		1.0
1722		11	88		0.923564
1723	11	88			0.923564
1724	60			40	1.0
1727	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain