SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14993

Length: 1597 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14993

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	uncharacterized protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK8

Fln msg:

Fln protein: MVGIFSRLTSTRAGLRSQASSDEREGTPSGKDSPATLADNHGVEPTEEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGRIWKERLEASARRRAEFPIIRESATQSQMLHRRRHTFSSEQSITPSFSCPEHSLLKLLDECNEQLKS*

Protein Length: 147

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGACAATGCATAATACTTTAGGAGGCAGCTAGATCTGGGGATCTGAACATAGAGAGATCCCATAAAAGGTGCCTAGAAAGTGGCGTCCCTGATCCCCAGCTGAATGCAAGGAGCTCATTGAAGGCGGTATTCAATCATCCAATTTTACAGCCTCATAACTGAGAGGTTGAAAAGTGGGCATCGAGGATCACATATTCGGCCTCCCAGGTGTGTTGGA_-_ATGGTGGGGATCTTCTCACGCTTGACATCGACCAGGGCCGGTCTTCGGTCTCAGGCCTCATCTGATGAGAGGGAAGGTACCCCATCTGGAAAGGACTCACCGGCCACTTTGGCAGATAACCATGGAGTTGAACCTACAGAGGAATTCAAGCCAGTAGAACACCCACTAGAGCCCCCGGACAAGGATCAACCTGTCAGATGCCCCCCCCCTGAACCATCTATTCTCCATGATGGAAGAATATGGAAGGAAAGACTAGAGGCAAGTGCTCGGAGAAGAGCTGAATTCCCTATTATAAGAGAATCAGCAACTCAATCACAGATGTTGCACAGGAGGCGACATACATTTTCAAGCGAGCAGTCAATCACGCCTTCTTTCAGTTGTCCAGAGCACTCTCTACTAAAACTCCTGGATGAATGTAACGAGCAATTAAAATCATAG___TTCCTTTTTCTATCTTCTGAAGTTATATAGGAGGTTGTAAATAATAGCATATCAATGTTGTGGTTATTTTAAATTTGATTTGCATTTGATGCTATAATCTGGATAGTTGAACTACACCTCCCAGACTAATGTAATTAAGTCATGTGCTGACTGGATAAATAGAAAACATTGTTTTCATGCTCTTTTATCAAGCTTGTCTTGAGCAATCAGCTTGAACAAGTGCAAAATTCTACCGTTTCACTGTTCACTTGGAATTGTTTCATATTTCTACCGTCAGTTTGAAGTGTGTACTTGCTATCAGTTCAAAAAATTAGCTTTGGACAAGCATCACCTTCTCCTTGAAATGTAATTATGTCATAACACTTTCTGGAGAGCTTAGAGCATTGGATTCTCCCTCCCAGAAGTCTCCATCTTTGGGAATATGTATTTTGGTTTATGACTACGGAGACATGAAGATATTTGTTACTGTCATATTCATTTCCATACAAGAGAAACTGGTTAACTATTAACTACAGTAAAAGAAATTTTTTCACTCGTGATTTTCCTGACCTCGATATTTATCAAAGAATTTCTCTAGGGAGATGAACCTATGGAGTCGCAGTCCCAAAAGGGTCCTCTTTCATTGCTATGGATTGCAGTCAGATTATTGGTTAGGGAATATAGGAAGGTGCAGTTTCCATTTTATCTTTTTAATGGGAAGGGAATATCACTCGATTGCAGTCTAGCCATCTAAGATGCAATTCGGCGGTGATTAAACTTGAAAGCGAATTGAGTTTTGTGTGTCTGGCTGTACTATTCTGGTGGAAGAAATAAGAATTGATTGTCTTCTGCTAGTTGATGGTATCCAAGATTGGTTTCAATTCATGTTTTGACCCTTTTTCTTTCTTTTCTATTTGACCTTGTTTGGTAGAATTGTATG

Fln Alignment:

sp_v1.1_unigene14993___MVGIFSRLTSTRAGLRSQASSDEREGTPSGKDSPATLADNHGVEPTEEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGRIWKXXXXXXXXXXXXFPIIRESATQSQMLHRRRHTFSSEQSITPSFSCPEHSLLKLLDECNEQLKS
A9NWK8_______________MVGIFSRLTSSRAGLRSQASTDEREGTPSGKDSPATLADNHGVEPTDEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGTIWKERLEASARRRAEFPIIRESGSQSQMLHRRRHTFSSEQSIMPSFSCPEHSLLKLLDECNEQLKS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
824		11		88	0.999937
827		11	88		0.999937
828		88	11		0.999937
833		11		88	0.999937
834			88	11	0.999937
838	88		11		0.999937
839	88		11		0.999937
840	88	11			0.999937
842	83		11		0.999887
843			88	11	0.999937
844	88	11			0.999952
846	88	11			0.999952
847	88			11	0.999952
858	26		73		1.0
916		33		66	1.0
1121	50	50			1.0
1176	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain