SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14978

Length: 1430 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14978 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alcohol dehydrogenase, putative (EC:1.6.5.5)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	quinone oxidoreductase-like protein at1g23740	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	80%
Blast2go	GroES-like	IPR011032	-	80%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	80%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	80%
Blast2go	NAD(P)-binding domain	IPR016040	-	80%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF8

Fln msg:

Fln protein: MQKAWFYKEYGSIDVLEFGEFPVPKPGPGEILVKVKAAALNPVDFKKREGLFKSDDCDFPAVPGCDAAGVVVEVGDGVSKFKNGDEVYTDVQVFTAGKPKQLGTLAQYTLVEEHLVAPKPTNLSFEEAASLPLAVLTAQEAFDIAKFEKGQSVFIVGGAGGVGSLAIQLAKHVYGASRIVSTASTGKLDFVKSLGADEVIDYTKQSYDQISEKFDFVFDTIGESSKSHVVAKEEAKVLDIASFQPIPRAEFFLVTPSAHNLEKLQPYIESEKLKPVIDPKSPFSFSDVIEAFKHQESGRAKGKIVISPID*

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAATGACCCATTCGGATTGGGTTGACGTGGCATGGAATTGATCGATTTTAATGGGAAACACCAACCCCTTGTCAATCGAAATCGCCCCGTACATGGCTGATTAATGGCTATAAATATACACCCCAATATCCCCAATGGGGTCCGCACCAGTCTCTGAATTTCCGATTCATCAGATCAGAACGAGACAAACTGTTGCAGGTTGCAGAAAGATTGGAGCAAA_-_ATGCAGAAGGCGTGGTTCTACAAAGAATATGGATCCATAGACGTTTTGGAGTTCGGGGAATTCCCTGTGCCAAAGCCGGGGCCAGGTGAGATTTTAGTTAAAGTCAAAGCTGCCGCGCTGAATCCTGTCGACTTTAAGAAACGAGAAGGCTTATTCAAGAGCGACGATTGCGACTTTCCGGCTGTGCCGGGTTGTGATGCAGCAGGAGTGGTGGTGGAAGTTGGCGATGGCGTTTCCAAGTTCAAGAATGGTGATGAGGTCTACACCGACGTTCAGGTCTTCACAGCGGGAAAGCCAAAGCAATTGGGGACACTCGCCCAGTACACCCTAGTGGAGGAACACCTGGTGGCTCCTAAGCCCACTAATTTATCGTTCGAGGAAGCTGCGAGTCTGCCGCTTGCGGTACTGACTGCCCAGGAGGCGTTCGATATAGCGAAATTTGAGAAGGGGCAGAGCGTGTTCATAGTGGGTGGAGCGGGCGGAGTGGGTAGCCTCGCTATTCAGCTTGCGAAGCATGTGTATGGAGCTTCCAGGATTGTTTCCACGGCTAGCACTGGGAAGCTTGACTTCGTGAAAAGCCTAGGGGCAGATGAGGTCATCGATTATACGAAGCAGAGCTACGATCAGATCTCCGAGAAATTCGATTTCGTGTTCGACACCATAGGGGAGTCGAGCAAGTCCCATGTTGTGGCCAAAGAGGAAGCCAAAGTTCTGGACATAGCTTCATTTCAACCAATTCCCAGAGCTGAATTTTTCTTGGTAACACCCAGTGCCCATAACCTGGAGAAGCTGCAGCCGTACATAGAAAGTGAGAAATTGAAACCAGTGATCGATCCAAAGAGCCCTTTTTCATTCTCTGATGTTATAGAGGCTTTCAAACATCAGGAGAGCGGACGAGCCAAAGGAAAGATTGTCATTTCGCCGATCGATTAA___GAGCAGAGTTGTGTAGGAACTGTCTAAGTTTTCAGGTTGTTCCGGATATATAAATAGTACTGTGGGCTATGAATTAGTTTCAAGGGATTCTATCTTTTTGAGAACAGGTTTTTTTAAATTTGTTTAAATTTTGGATTTATTACGAGTAACAGGGTTAACTTTTTATGAGGTTTATTATAGATTTAAATGATGCTAGTCACCCAACTATATATATTTGAAATTTAATATTAAAGTAATATATATGAAATTTTT

Fln Alignment:

sp_v1.1_unigene14978___MQKAWFYKEYGSIDVLEFGEFPVPKPGPGEILVKVKAAALNPVDFKKREGLFKSDDCDFPAVPXXXXXXXXXXXXXXVSKFKNGDEVYTDVQVFTAGKPKQLGTLAQYTLVEEHLVAPKPTNLSFEEAASLPLAVLTAQEAFDIAKFEKGQSVFIVGGAGGVGSLAIQLAKHVYGASRIVSTASTGKLDFVKSLGADEVIDYTKQSYDQISEKFDFVFDTIGESSKSHVVAKEEAKVLDIASFQPIPRAEFFLVTPSAHNLEKLQPYIESEKLKPVIDPKSPFSFSDVIEAFKHQESGRAKGKIVISPID
A9NZF8_______________MQKAWFYNEYGSIDVLQFGEFPVPKPGPGEILLKIRAAALNPVDYKKREGLFRSADCDFPAVPGCDAAGVVVEVGDGVSKFKIGDEVYSDIQHFTAGRPKQLGTLAQYTVVEEHLVAPKPTNLSFEEAASLPLAVLTAQEAFDIAKFEKGQSVFIVGGAGGVGSLAIQLAKHVYGASRIVSTASTGKLDFVKSLGADLVIDYTKQSYDQISEKFDFVFDTIGEAAKSHVVAKEEAKVLDIASFQPHPRAEFFLVSPSAHNLEKLQPYIESEKLKPVIDPKSPYSFSDVIEAFKHQESGRAKGKIVISPIE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
620		25		75	0.996473
950			90	9	1.0
1193		38	61		1.0
1210			75	25	1.0
1215	60		39		1.0
1222		39		60	1.0
1225		3	96		0.993591
1259		42	57		1.0
1270	75	25			0.996473
1271	25	25		50	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain