SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14972

Length: 1770 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14972

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rubrerythrin domain containing protein	-	-	9.99995e-41	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	magnesium-protoporphyrin ix monomethyl ester	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase.	EC:1.14.13.81	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	94%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	94%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	94%
Blast2go	photosynthesis	GO:0015979	Biological Process	94%
Blast2go	metal ion transport	GO:0030001	Biological Process	94%
Blast2go	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	GO:0048529	Molecular Function	94%
Blast2go	DNA binding	GO:0003677	Molecular Function	94%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	94%
Blast2go	iron ion binding	GO:0005506	Molecular Function	94%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	94%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ9

Fln msg:

Fln protein: MGTSNATPLSLCLVSLWELSFRGVVLTMPAMAAHSLVDLALPLRLGTSDSSLSSCRTLGGYGFRPLPSMVNRERRACSYSHCGVKAAAASETVVKEKKPKNNNKKGAKEGIKESLLTPRFYTTDFDEMEMLFNTEINKNLDQSEFKALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVGINQQIIAIGESQAPGFVKNVQRIPLIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY*

Protein Length: 461

Fln nts: _-_ATGGATGGGTACATCAAATGCTACGCCTCTCTCGCTCTGCTTAGTCTCGTTGTGGGAATTAAGCTTCCGAGGCGTAGTACTCACAATGCCAGCCATGGCAGCCCATTCCTTAGTAGATTTAGCTCTTCCACTGCGGTTGGGTACATCAGATTCATCACTGTCTTCGTGTAGGACGCTCGGTGGCTATGGCTTTAGGCCATTGCCATCGATGGTGAATAGGGAAAGACGAGCTTGCTCATACAGTCATTGTGGAGTGAAGGCCGCTGCTGCTTCCGAGACTGTCGTGAAAGAGAAGAAGCCCAAGAATAATAATAAGAAGGGTGCCAAAGAAGGCATCAAAGAATCACTGCTCACCCCTCGCTTCTACACAACTGACTTTGATGAGATGGAGATGCTGTTCAACACTGAAATCAACAAGAATCTCGATCAGTCAGAGTTCAAAGCTTTGCTTGCAGAATTTAAGACTGATTATAATCAAACCCATTTCGTCAGAAATCCAGAATTCAAGGAGGCTGCAGACAAAATGCAAGGCCCACTCAGAAAGATCTTTGTTGAGTTTCTGGAGAGGTCATGTACTGCTGAGTTTTCCGGATTTCTTCTCTACAAGGAACTCGGAAGAAGACTCAAGAAAACCAATCCAGTTGTGGCTGAGATATTTTCCCTCATGTCCAGAGATGAAGCTCGCCATGCAGGGTTTCTGAACAAGGGTTTATCAGATTTCAATCTTGCACTGGACCTTGGTTTCCTAACTAAAGCACGCAAATATACGTTTTTCAAGCCTAAGTTCATATTCTATGCCACTTACTTATCTGAGAAGATCGGTTACTGGAGATATATTACCATCTATAGGCACCTAAGAGAAAACCCTGAGTATCAAGTGTATCCTATATTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAATAGGCACGGTGACTTTTTCTCAGCTTTAATGAAAGCACAGCCACAGTTTCTGAATGACTGGAAGGCCAAGCTTTGGTCAAGGTTTTTCTGTCTCTCGGTATATGTGACAATGTACTTGAATGATTGCCAGAGGACAGCATTTTATGAAGGCATTGGACTGAACACAAAAGAGTTCGATATGCATGTTATCATTGAGACAAATCGAACTACAGCAAGGATTTTTCCTGCTGTCTTGGATGTTGAGAATCCAGAATTCAAAAAGAAACTCGACAGGATGGTAGGCATCAACCAGCAGATAATAGCAATTGGAGAAAGCCAAGCTCCTGGCTTTGTGAAGAATGTCCAAAGAATTCCTCTTATAGCTGCCTTGGTGTCAGAATTAATAGCAGCTTATTTGATGCCACCCGTGGATTCCGGTTCTTTGGATTATGCTGATTTTGAGCCACAGGTTGTGTACTAA___ATGCATTTCATACATGCGGAACTGCAGGGTTGCACTATATAGTCGAGAATGGAGCTCTCTGATCCTGTGCCTTTCTTTGTAGTTGCTTGTATTTGGAGATATCGTACCCTTTTCTAGAAAGCAATTCAATTTCTGTAGGAAAATTGTGTTTACATATGCACATGCTACATACACCGTTGGAGTTATGTACTCGAAATTTCTCAGCAATGGAAAGTCCATATGTCTTGTTACTAAACAAAATATTCTTAGACCATAGCAGAACATCTTTACTAGGACCATTGCAAGATCGTACAGATGAATAATCCAGAAATGAGTAGTGTCCTTGTAATTTTTTGTTCTCATTTTCTTCTTTTATGTACTCTAAAGTTCTGAGCAATGGAAAGTCC

Fln Alignment:

sp_v1.1_unigene14972___MPAMAAHSLVDLALPLRLGTSDSSLSSCRTLGGYGFRPLPSMVNRERRACSYSHCGVKAAAASETVVXXXXXXXXXXXXXXXXXXXSLLTPRFYTTDFDEMEMLFNTEINKNLDQSEFKALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVGINQQIIAIGESQAPGFVKNVQRIPLIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY
A9NUZ9_______________MPAMAAHSLADLSLAVRLGTSDSSLSSCRTLGGYGFRPLPLMVNRERRACSYSHGGVKVAAASEVAVKEKPKNNNKKGAKEGIKE-SLLTPRFYTTDFDEMETLFNTEINKNLDQSEFQALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVDINRQIIAIGESQAPGFVKNLQRIPFIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1046		10		90	0.90298
1047		10	90		0.90298
1049	10			90	0.90298
1050		10		90	0.90298
1052	10	90			0.90298
1054	90			10	0.90298
1670	88		11		0.923564
1715	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain