SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14967

Length: 1558 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14967

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VAMP protein SEC22	-	-	7.0e-35	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	vamp protein sec22	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to virus	GO:0051607	Biological Process	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL00

Fln msg:

Fln protein: MSGKGGNKDCGNHSRPFFGPARPIRRCMSSLCVLVIIALLVILIVFLVLHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPFYQGDDDYDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGNGQVPLQPGTRCDVEV*

Protein Length: 211

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGAATTGACTTCCTTTACACAGCGGTGTGATTTAGCTTTAATTTTCCGTTTCCAGAGAGTGTAGGGTTGAGGGAAGGACGTGGAATTCTTTTTAAATTCAGACAGCCGACACGCAGAGCCAGGGACTGGCGGGCGCGTTGGCCTGAGCTTTTCTTTCTTTGTTCTGCGACGCTGCAACGACCTGGAGCTAACGTTTCTCGTGTGTGGATTACAGAGCTTTGGCCAATCGGCTCTCGACATTAAAGAATACAGTACAGTACAGTAAGCCTCCGACCTGAAACGGACGATTCTCGGATCGGGCGGTTTCTGTTGGAGCTTCGACCGCCAGTACGCTAGCCGAAGGTTCGAAGAATTTTGTCTCGAGGAGAGAATTAGGGGCGCCAAGCTTCAGAC_-_ATGTCAGGGAAAGGGGGCAACAAGGACTGCGGCAACCATTCAAGGCCGTTTTTCGGACCGGCGAGGCCCATCCGGAGATGTATGAGTTCTCTGTGCGTGCTCGTCATCATCGCGCTCCTGGTGATCCTGATCGTCTTCCTGGTTCTGCACCCGCACAAGCCACGATTCTATGTTCAGGACGCTACGGTGCGCGAGCTGAATCTCACCAATGGCGTGCTCACCACGATGGTCCAGTTCTCCATCGTCTCGCACAACCCGAATGACAGGATCGGTGTCTACTACGACAGCCTCAGCGCCTACGCCACTTACGAGGGGCAGCAGATCACGCCCCCCTGCTCGTTGACCCCTTTCTACCAGGGCGACGACGATTACGACGTGCTGTCTCCGGTTTTAACCGGGATCAACGTTGCCCTGGCGCCCTTCGTGGCCGATCATCTGAACTACGAGAAGCAGAACCACTTGCTGAGCTTGACTCTAAAGATGTACGGGAGGATCCGCTGGAAGGTGGGCACCTGGACTTCTGGGCATTATCATTTGAATGTCAATTGCTTTGCTATCATGGGAATGGTTAACACCGGCAATGGACAAGTTCCTCTGCAGCCCGGCACCAGATGCGATGTGGAGGTCTGA___ATGTGAGTTTTTATAGGTTAAATTAAATTATATCAGAATTTCATGGTACACTAGGGTAGTCACTATGTTTCAGGTTTTATTTGAATAATTTGAGCAACCCCTTTCTCCATTCAATAAAATTTCTTCTGTATGTATGGTCTACTTTAGTTTTTCTGCAGAGACTCTGGACTGGAATATGAATTTACCAGTCAGAGCTTAACAGCCCCACCTTACCGAATTGGGACGTAAGGAAGGAATGGGCTTCAGAGCTATAGTGTTTAGGTTCAGGGCAAATAATGGCTGCTGAGGAGAAACTAACTCTTCATTTTCTGAACTTTTAGTTGGGCGGCCTTAGATGTAATATTCAACTTCTTAGCTTTTCACTCCATGGCTCCGTTGATTCTCAAGCCATAAATGGTGTGAGGGATGTCTATTATTTCTTCCATATGCCATTACTCTGTAAATATCCCAAAGTTCTAATAATGACAATAATGTTAAGAGGTATATGCCCCAAGTTTTCAATGAAATTTT

Fln Alignment:

sp_v1.1_unigene14967___MSGKGGNKDCGNHSRPFFGPARPIRRCMSSXXXXXXXXXXXXXXXXXXXHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPFYQGDDDYDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGN-GQVPLQPGTRCDVEV
B8LL00_______________MQGKGGSKDCGNHGSPRLLPGRGFRRCMGSLFVLVVIALFVILVVYLVLHPHKPRFYVQDATVHQLNLTNGLLTSSLQFSIVSHNPNDRIGVYYDSLNAYATYAGEQITPQCSLTPFYQGDNDVDVLSPILYGNSVALAPFVADHLNYEKQNGVLSLTLKMYGRIRWKVGSWTSGRYHLNVNCFAIMGMRNSGNAGQVPLQPGTRCDVEV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1322	2		97		0.941605
1410		3		94	0.930835
1537	14			85	0.993533
1539		16		83	0.994512
1545		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
273	289	TACAG TACAG TACAG TA	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain