SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14960

Length: 1668 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coptis japonica RepID=B0I373_COPJA	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	galactinol synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS25

Fln msg:

Fln protein: MAPPGVPAELFGGSKVGALTGGYNSKRGYVTFLAGSGDYWKGVVGLAKGLRKANSAYPLVVAMLPDVPEEHREILRRQGCICREIEPIYPPENQVQFAMAYYVINYSKLRMWEKFEDYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQHKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLMQNLRITPPTPFAEQDFLNMYFKKMYKPIPLVYNLVLAMLWRHPENVDLEKVKVVHYCAAGSKPWRYTGKEENMQREDIKVLVKKWWDIYNDESLDYKAEEHSIPEAETLSNLQQITANSLLATIPTAAGFIPAPSAA*

Protein Length: 346

Fln nts: GGCTTCATTTGAAGTTTATTCGGAGTGCATGTAAGCTCTATATATAGGAAACCCGGCCGGCATGGGGAGGGTGAGCCTGAGCTTGTGAAGCCTGAGTCTTCCTTCCCCAGATTCGATCCTGTGACCTGCTGCT_-_ATGGCACCACCTGGGGTTCCTGCAGAGTTGTTTGGAGGGTCGAAGGTGGGTGCCCTAACCGGAGGGTATAACTCCAAGAGAGGGTATGTTACCTTCCTGGCGGGTAGTGGCGATTACTGGAAGGGCGTTGTAGGGCTGGCTAAGGGCCTTCGTAAGGCCAATAGCGCCTACCCCCTCGTTGTTGCCATGTTGCCTGATGTTCCCGAGGAGCACAGAGAGATTTTGAGGCGCCAAGGATGTATATGTCGCGAGATCGAACCTATCTACCCTCCTGAAAATCAAGTGCAGTTCGCCATGGCTTACTATGTCATAAATTACTCTAAGCTACGTATGTGGGAGAAGTTTGAGGATTACAGCAAGATGGTGTACCTGGATGCAGACATCCAAGTCTTTGAGAACATCGACAATCTCTTTGACATGCCGGATGGCTACTTCTATGCTGTCATGGACTGTTTCTGCGAGAAGACATGGAGTCACACTCCACAGCATAAGATAGGGTACTGCCAGCAATGCCCAGACAAAGTTCAATGGTCCTCTGAACTAGGCCTTCCTCCTGCGCTCTACTTCAACGCTGGCATGTTTGTCTTCGAGCCTAGCAAGTTAACCTTCGACAGCCTCATGCAGAACCTCAGGATTACACCTCCTACTCCCTTTGCAGAACAGGATTTCCTAAACATGTATTTCAAGAAGATGTACAAGCCCATTCCTCTCGTTTACAACTTGGTTCTAGCAATGCTATGGCGACACCCAGAAAATGTCGATCTGGAAAAAGTTAAAGTCGTCCACTATTGCGCAGCTGGATCCAAACCCTGGAGATACACGGGTAAGGAGGAGAACATGCAGAGGGAAGACATAAAAGTATTAGTTAAGAAATGGTGGGATATATATAACGACGAGTCTCTGGATTACAAAGCAGAGGAGCACTCAATTCCTGAGGCCGAAACCCTTTCGAACTTGCAACAAATTACAGCGAATTCATTGTTGGCTACAATTCCCACGGCCGCTGGTTTCATTCCTGCTCCTTCTGCAGCTTGA___TTATTCAGATGATCATCCATTAGGAAGTTCTTTAACATTGCAGTGTAGTCGTATAGAAGTTGCCAGAGGTTCCACCTCCATAGGCATAGAAGTTTATCTGTGTAATGATAATTGATTACAGTCTTGGTGACTAGCCAGTAATAGATATATATATAAATATTTGTGAAGTAAACTCGTGTTTGGGATGATTTGCTTTTGAGTGACTAATAATTGTAACGTGAAAGAGCTGCTGCGTACGGTAGAACACAGTTTTTTGGTCTCCGCAAAACAAAATAACGGTGCTTTTTATTCAGAGCAGTTCAGGTTTTGAAATTTCGAATAGATTTGAAGAACTTCAGAACCTTTCGAGGTCCAGGGAACGGTGGAGAAAGTGTATTGCATAGCTCTTATCCCACCCAACATGAGGCTCAGGACACTTTGTACTTCTCATTCAAAACATCCTAAACAGCTTGGAGGAATGCTTTATATAAAATTCATTAGACAAATTCAGTTTCATTTCG

Fln Alignment:

sp_v1.1_unigene14960___FGGSKVGALTGGYNSKRGYVTFLAGSGDYWKGVVGLAKGLRKANSAYPLVVAMLPDVPEEHREILRRQGCICREIEPIYPPENQVQFAMAYYVINYSKLRMWEKFEDYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQHKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLMQNLRITPPTPFAEQDFLNMYFKKMYKPIPLVYNLVLAMLWRHPENVDLEKVKVVHYCAAGSKPWRYTGKEENMQREDIKVLVKKWWDIYNDESLDYKAEEHSIPEAETLSNLQQITANSLLATIPTAAGFIPAPSAA
A9NS25_______________FGGSKVGALTSGYNSKRGYVTFLAGNGDYWKGVVGLAKGLRKVNSAYPLVVAMLPDVPEEHREILRSQGCICREIVPIYPPENQVQFAMAYYVINYSKLRIWE-FEEYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLIETLRITAPTPFAEQDFLNMYFQKMYKPIPLVYNLVLAMLWRHPENVDLDKVKVVHYCAAGSKPWRYTGKEANMQREDIKVLVQKWWDVYDDESLDFKAED-SIPEAETLSDLQQITANSLLAAIPTAAAFIPTPSAA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1525	82	17			1.0
1530	68		31		1.0
1587		81		18	1.0
1656	90			10	0.90298
1660		11		88	0.923564
1666		16		83	0.994512
1671		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain