SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14952

Length: 2025 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14952
ATGGGGAAGGCCCGTCACCGGCCCACGTGTTCGGAGCCACATCGTCCGTGGCACAAGTTGCCCTATTCGTATATAAGCCATTCTTGACCATCGAAATGCGGCTCTTCGAATTTTAATACCCGAAGCGGTAATACGGCGGCGGAGGCGATCTCACAGGTCGCTAATACCTTCGGCTATTTTTATCACGGGAATTTTCTCTTCGGCGTCTCGTCGCAGATCGAGGGTTTCTCAGGCAAAAATAAGATAAAATTCGAAAATGGCGGGTGTGGATGCGGCTGGAAACAACTTCGACGCCAAGAACTATGACAAAAACATGCAGAGTGTCCTTGGAGGAGAAGAACTTTATTCTACCTGGGAGGAAGTGAATGAAACCTTTGATTCTATGGGGCTTCAGGAAAACCTTCTAAGAGGAATTTATGCGTATGGTTTTGAGAAGCCATCTGCTATCCAACAGAGAGGGATTGTTCCTTTCTGTCAAGGTCTTGATGTTATCCAGCAAGCTCAATCAGGAACAGGAAAGACTGCAACTTTCTGTTCAGGAATTCTACAACAATTGGACTACAATGTTCCAGAGTGTCAGGCGCTAGTTTTGGCCCCAACTCGAGAACTAGCCCAGCAGATAGAGAAAGTTATGAGGGCACTTGGTGATTACCTACAAGTAAGAGTACATGCATGCGTTGGTGGGACAAGCATTCGAGAGGATCTCCGTATTCTCCAAGCTGGTGTTCATGTTGTTGTGGGGACGCCAGGTAGGGTCTATGACATGCTACGGCGTCGTGCCTTGCGTCCTGATTCAATCAAAATGTTTGTGCTCGATGAAGCAGATGAAATGCTATCACGTGGATTTAAGGACCAGATATATGATATCTTTCAATTGCTACCTTCAAATCTCCAAGTTGGTGTTTTCTCGGCTACCATGCCTCCTGAAGCTTTGGAGATTACTAGGAAGTTCATGAATAATCCAGTCAGGATTCTTGTCAAAAGAGACGAGCTTACCCTGGAGGGTATCAAACAGTTCTATGTCAATGTAGAACGTGAGGACTGGAAGCTTGATACACTGTGTGACTTATACGAAACTTTGGCAATCACACAGAGTGTGATTTTTATCAATACCAGAAGAAAGGTAGATATGCTCACAGATCAAATGCGAGCTCGGGATCATACAGTGTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATCATGAGGGAATTTAGGTCTGGATCTTCTCGAGTGTTGATCACCACTGACCTATTGGCCCGAGGTATTGATGTACAACAAGTGTCTCTTGTTATCAACTATGACTTACCAACACAGCCTGAAAACTACCTCCACCGTATTGGTCGTAGTGGGCGATTCGGGAGAAAGGGTGTGGCCATCAACTTTATTACCAAGGATGATGAGAGAATGCTGCAGGACATCCAGAGATTCTATAATGTGGTAGTTGAAGAATTGCCGAATAATGTTGCTGATTTAATATAAATGTTTTGCAGAAGCAACCCATGTGTACGGTGCAGTGTGCAGTGAGTTGAGTACACTTTATCTTTTGGGTTGAAAACACTTCCTCCCTCGTGATTCTGAAAATTGTTAACTACTATTTTGTGTGGAGTAATGTATTACTTTGACCTTTAGTAACTGTATTGTTTTGTTGTAATCTCATATGAGAGGGAGCCATTTTAAGCTCTTTTCTTGCCCTCTCAAGGTCTTTACAAGTCAGTACTCATAATATGAGCCTGAGAGAGTGTAACTTCTCAAAGAGTTTATAAGTTAATATGCATAATATGTCGTTGAGAGAGTGTACCCTCTCAAAGTTTTTGTAATTAATATGCTTAATATGAGGTTGAGAGAGTGTAGTGAGTGAATATTCTGCAATCTGTCATTCATAGTACCCTCTCTAAAGTTTTTGTAACTTAATATGCTTAATATGAGGTTGTAGAGAGTGTAGTGAGTGAATATTCTGCAATCTGTCATTCATATTTCGATCTTTTATGGATCCGACTGCTTAGAACATGTGT

Ace file of the UniGene sp_v1.1_unigene14952

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic initiation factor 4A-1 n=14 Tax=Magnoliophyta RepID=IF4A1_ORYSJ	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	94%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	94%

Source	InterPros	Term	Type	Identity
Blast2go	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	94%
Blast2go	Helicase, C-terminal	IPR001650	-	94%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	94%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	94%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRB6

Fln msg:

Fln protein: MAGVDAAGNNFDAKNYDKNMQSVLGGEELYSTWEEVNETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVVEELPNNVADLI*

Protein Length: 413

Fln nts: ATGGGGAAGGCCCGTCACCGGCCCACGTGTTCGGAGCCACATCGTCCGTGGCACAAGTTGCCCTATTCGTATATAAGCCATTCTTGACCATCGAAATGCGGCTCTTCGAATTTTAATACCCGAAGCGGTAATACGGCGGCGGAGGCGATCTCACAGGTCGCTAATACCTTCGGCTATTTTTATCACGGGAATTTTCTCTTCGGCGTCTCGTCGCAGATCGAGGGTTTCTCAGGCAAAAATAAGATAAAATTCGAAA_-_ATGGCGGGTGTGGATGCGGCTGGAAACAACTTCGACGCCAAGAACTATGACAAAAACATGCAGAGTGTCCTTGGAGGAGAAGAACTTTATTCTACCTGGGAGGAAGTGAATGAAACCTTTGATTCTATGGGGCTTCAGGAAAACCTTCTAAGAGGAATTTATGCGTATGGTTTTGAGAAGCCATCTGCTATCCAACAGAGAGGGATTGTTCCTTTCTGTCAAGGTCTTGATGTTATCCAGCAAGCTCAATCAGGAACAGGAAAGACTGCAACTTTCTGTTCAGGAATTCTACAACAATTGGACTACAATGTTCCAGAGTGTCAGGCGCTAGTTTTGGCCCCAACTCGAGAACTAGCCCAGCAGATAGAGAAAGTTATGAGGGCACTTGGTGATTACCTACAAGTAAGAGTACATGCATGCGTTGGTGGGACAAGCATTCGAGAGGATCTCCGTATTCTCCAAGCTGGTGTTCATGTTGTTGTGGGGACGCCAGGTAGGGTCTATGACATGCTACGGCGTCGTGCCTTGCGTCCTGATTCAATCAAAATGTTTGTGCTCGATGAAGCAGATGAAATGCTATCACGTGGATTTAAGGACCAGATATATGATATCTTTCAATTGCTACCTTCAAATCTCCAAGTTGGTGTTTTCTCGGCTACCATGCCTCCTGAAGCTTTGGAGATTACTAGGAAGTTCATGAATAATCCAGTCAGGATTCTTGTCAAAAGAGACGAGCTTACCCTGGAGGGTATCAAACAGTTCTATGTCAATGTAGAACGTGAGGACTGGAAGCTTGATACACTGTGTGACTTATACGAAACTTTGGCAATCACACAGAGTGTGATTTTTATCAATACCAGAAGAAAGGTAGATATGCTCACAGATCAAATGCGAGCTCGGGATCATACAGTGTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATCATGAGGGAATTTAGGTCTGGATCTTCTCGAGTGTTGATCACCACTGACCTATTGGCCCGAGGTATTGATGTACAACAAGTGTCTCTTGTTATCAACTATGACTTACCAACACAGCCTGAAAACTACCTCCACCGTATTGGTCGTAGTGGGCGATTCGGGAGAAAGGGTGTGGCCATCAACTTTATTACCAAGGATGATGAGAGAATGCTGCAGGACATCCAGAGATTCTATAATGTGGTAGTTGAAGAATTGCCGAATAATGTTGCTGATTTAATATAA___ATGTTTTGCAGAAGCAACCCATGTGTACGGTGCAGTGTGCAGTGAGTTGAGTACACTTTATCTTTTGGGTTGAAAACACTTCCTCCCTCGTGATTCTGAAAATTGTTAACTACTATTTTGTGTGGAGTAATGTATTACTTTGACCTTTAGTAACTGTATTGTTTTGTTGTAATCTCATATGAGAGGGAGCCATTTTAAGCTCTTTTCTTGCCCTCTCAAGGTCTTTACAAGTCAGTACTCATAATATGAGCCTGAGAGAGTGTAACTTCTCAAAGAGTTTATAAGTTAATATGCATAATATGTCGTTGAGAGAGTGTACCCTCTCAAAGTTTTTGTAATTAATATGCTTAATATGAGGTTGAGAGAGTGTAGTGAGTGAATATTCTGCAATCTGTCATTCATAGTACCCTCTCTAAAGTTTTTGTAACTTAATATGCTTAATATGAGGTTGTAGAGAGTGTAGTGAGTGAATATTCTGCAATCTGTCATTCATATTTCGATCTTTTATGGATCCGACTGCTTAGAACATGTGT

Fln Alignment:

sp_v1.1_unigene14952___MAGVDAAGNNFDAKNYDKNMQSVLGGEELYSTWEEVNETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVVEELPNNVADLI
C0PRB6_______________MAGVDPAGNNFDAKSYDKNMQSVLGGEELYSTWEEVNETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVVEELPNNVADLI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1391	66		33		0.997452
1468	10		90		0.90298
1728		2		97	0.966038
1960	13			86	0.999973
1964		15		84	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain