SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14948

Length: 1139 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATARD2; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding; K08967 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	acireductone dioxygenase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acireductone dioxygenase (Fe(2+)-requiring).	EC:1.13.11.54	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	86%
Blast2go	Metabolic pathways	01100		0.0	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Acireductone dioxygenase (Ni(2+)-requiring).	EC:1.13.11.53	-	0.0	69%

Source	KEGGs	Term	Type	Identity
AutoFact	Cysteine and methionine metabolism	00270		69%
AutoFact	Metabolic pathways	01100		69%
AutoFact	Acireductone dioxygenase (Fe(2+)-requiring).	EC:1.13.11.54	-	69%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Cysteine and methionine metabolism	00270		0.0	69%
AutoFact	Metabolic pathways	01100		0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	acireductone dioxygenase [iron(II)-requiring] activity	GO:0010309	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Blast2go	Acireductone dioxygenase ARD family	IPR004313	-	86%
Blast2go	Cupin, RmlC-type	IPR011051	-	86%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKP1

Fln msg:

Fln protein: MGIEVKSSPIEAWYMDDSTEDQRLPHHRDPPQYLSLENLADLGVLYWKLDADNFETDPELQEIRKSRGYNYMDMLTVCPDKLPNYEQKIKTFFEEHLHMDEEIRYCLDGTGYFDVRDKDDQWIRIWIKKGDMIVLPAGCYHRFTLDTNNYIQVMRLFQGEPVWTAYNRPNDDNPAREMYVNRFIKQQC*

Protein Length: 190

Fln nts: AGATTTCAGTGACGTATCTCAGATATCGTCGTGACCTTGGTTGTCACTCAATTTCTCGAATCATCTATCGAGATAGGACTGTGGGATGCTTCGTGGAACGTGTGGTGTATATCTAACGCTAACACCATTCTATCGATTGCCGTCTCTCTATTTATTGGGTGAAATCAACGCCAAATAGTTGCACCATTATTTCATTTCATCCTCAATACCTTTGTAGAGCTCTTTTACAGGTTCAGCGCTATCAGCGATCA_-_ATGGGCATCGAGGTAAAGTCTTCTCCCATTGAAGCTTGGTACATGGATGATTCAACAGAAGATCAAAGGTTACCGCATCATAGAGATCCTCCACAATATTTATCATTGGAAAATTTAGCAGATTTAGGTGTTCTATACTGGAAGTTGGATGCAGACAATTTTGAGACAGACCCAGAGCTGCAAGAAATTCGAAAGTCCAGAGGATATAACTATATGGATATGTTAACAGTATGCCCAGATAAGCTTCCGAACTATGAACAGAAGATAAAAACTTTCTTTGAGGAGCACTTGCACATGGATGAGGAGATCCGTTATTGCTTAGATGGCACTGGCTATTTTGATGTAAGAGATAAAGATGACCAATGGATACGCATATGGATTAAGAAGGGGGATATGATTGTCTTGCCAGCGGGATGCTACCATCGATTTACTCTTGATACAAATAATTACATTCAGGTTATGAGGCTCTTCCAAGGTGAACCAGTTTGGACAGCATACAATCGTCCAAATGATGACAACCCAGCTAGGGAAATGTATGTGAACCGGTTTATAAAGCAGCAATGCTGA___TTACATTTTTCTGGGGATACAGATCATTCTCTCTTTTTTATGTACGAATATTGTAGGAATAAGCTGGTTGCATGTGAGTAGTATTATACCATTCAGAAATGAGGTGGCAGTTTAATCTGTGTGTGCTGTTTACAAATAAAGATTGTTGTATGAGATTCAGGAGTGAATATTCAATATGTGATGTAATAACAGGATCACGTAAACAGTTTCATGTTGAGGACCTGACGCAAACAGGAAATTCTATATAATCTGAATGAGTATCCAAATGTTTGTTACACTTGAATAAGCTTGTTTCATTTGTAGAGCGGGCGGTGGATTGAC

Fln Alignment:

sp_v1.1_unigene14948___MGIEVKSSPIEAWYMDDSTEDQRLPHHRDPPQYLSLENLADLGVLYWKLDADNFETDPELQEIRKSRGYNYMDMLTVCPDKLPNYEQKIKTFFEEHLHMDEEIRYCLDGTGYFDVRDKDDQWIRIWIKKGDMIVLPAGCYHRFTLDTNNYIQVMRLFQGEPVWTAYNRPNDDNPAREMYVNRFIKQQC
A9NKP1_______________MGIEVKFPPMEAWYMDDSAEDQRLPHHRNPPQYLSLEKLADLGVLYWKLDADNFETDPELQEIRKSRGYNYMDMLTVCPDKLPNYEEKIKNFFEEHLHMDEEIRYCLDGSGYFDVRDKDDEWIRIWIKKGDMIVLPAGSYHRFTLDTTNYIKVMRLFQGEPVWTAYNRPNDDNPVREMYVNQFLKQQC

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
831		49		50	1.0
837			50	48	1.0
1019			80	20	1.0
1055	83	16			1.0
1068		14		85	1.0
1096	80			20	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain