SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14935

Length: 1434 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	non-canonical ubiquitin conjugating enzyme, putative (EC:6.3.2.19); K10578 ubiquitin-conjugating enzyme E2 J1 [EC:6.3.2.19]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	71%
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	71%
Blast2go	post-translational protein modification	GO:0043687	Biological Process	71%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP14

Fln msg:

Fln protein: MAEEKFNMKNPAVKRILQEVKEMQNNPSDDYMSLPLEDNIFEWQFAIRGPRDTEFEGGIYHGRIQLPPDYPLKPPSFMLLTPNGRFETQTKICLSISNYHPEHWQPSWSVRAALVALIAFMPTKPEGAVGSLDYSKEERIALATKSRTHPPKFGNADRQRLIDEVHEYMLKKSPPVPECCAVTNNQEACKQSVLSDVDDQAKVVTAATAEHSQAGETEMVGNVHDVHVNANASPMGVSVSGELGLSTEPVVEVMQTEQRNQEVRNNSTIREQTLPDDKGLTLLAVGLCVAIIALLIKKFLKSYWWIGA*

Protein Length: 310

Fln nts: CGTCGTGACCGTCGTGACCTTGGCTGTCACTCAATTCATAAGAAGACGAAAAGAGACATTGAAACCTGCACTCCTTCACAAGTCAGGAGATCGACTTCCCTGGCCGCTGAAGAATTAATAGTTCCAGGTTACAATTGTCTCTGAAATCGGCTGATTTGTGTAGTTGAGTGTATTCAGATCGGGTAATTCGAA_-_ATGGCGGAAGAGAAATTCAATATGAAGAATCCTGCTGTGAAGAGGATCCTGCAGGAGGTGAAGGAAATGCAGAACAATCCCAGCGATGACTATATGAGCCTTCCGTTGGAGGATAATATTTTCGAGTGGCAGTTTGCCATTAGAGGACCTCGGGATACGGAGTTTGAAGGCGGGATTTATCATGGTCGAATCCAGTTGCCTCCAGATTACCCTTTGAAGCCCCCTTCCTTTATGTTATTGACGCCCAATGGCAGATTTGAAACTCAGACAAAGATATGTTTGAGCATATCAAATTATCACCCTGAGCATTGGCAACCATCATGGAGCGTTCGAGCTGCGTTGGTAGCACTTATTGCATTCATGCCAACAAAACCAGAAGGAGCAGTTGGATCTCTTGATTACTCTAAGGAAGAAAGGATTGCACTTGCCACCAAGTCCCGTACGCACCCACCGAAGTTTGGAAATGCAGATCGTCAAAGATTAATTGACGAGGTTCATGAGTATATGTTGAAGAAGTCTCCTCCTGTACCTGAATGCTGTGCTGTGACAAATAATCAAGAGGCATGCAAACAATCTGTGTTGTCTGATGTTGATGACCAAGCCAAGGTAGTAACAGCTGCAACTGCAGAGCATTCACAGGCAGGAGAAACTGAGATGGTTGGAAATGTGCATGACGTGCATGTGAATGCTAATGCATCTCCCATGGGAGTGAGTGTGAGTGGAGAGTTGGGATTATCTACAGAACCTGTGGTTGAAGTGATGCAGACTGAACAGAGGAATCAAGAAGTGAGGAATAACTCAACGATTAGAGAACAGACATTGCCTGATGACAAAGGGTTGACACTGTTAGCAGTTGGCTTATGCGTGGCTATTATTGCTCTTCTTATAAAGAAGTTTTTGAAATCATACTGGTGGATTGGTGCTTAA___GTTTGTAGTATTCTATTGCTTTGGAATTGTAATCTGTGAATATATGCTGATAGTAAACTTTTGTAATATTGTTTTGATTTAAAGTTTACCTTTATACAAGGTTATTGAGAATTATTCTATTTGAAAAGCAGTTCAAGAACCAGGGCCATAGAATCACTTTTTTGAACTTTGTCTCTGTTTTCTTTTCTGCACCTGTATTGGTTTTGTAGTGTTAAAGAATGAGTTCTTTGTATCTACATGACCATCTCCCAATTACAAAAAAATGGATGTATCTGCAAAATGTTATCATTCAAATTCAAGTTCAATGACTTTGCG

Fln Alignment:

sp_v1.1_unigene14935___EKFNMKNPAVKRILQEVKEMQNNPSDDYMSLPLEDNIFEWQFAIRGPRDTEFEGGIYHGRIQLPPDYPLKPPSFMLLTPNGRFETQTKICLSISNYHPEHWQPSWSVRAALVALIAFMPTKPEGAVGSLDYSKEERIALATKSRTHPPKFGNADRQRLIDEVHEYMLKKSPPVPECCAVTNNQEACKQSVLSDVDDQAKVVTAATAEHSQAGETEMVGNVHDVHVNANASPMGVSVSGELGLSTEPVVEVMQTEQRNQEVRNNSTIREQTLPDDKGLTLLAVGLCVAIIALLIKKFLKSYWWIGA
B8LP14_______________DKFNMKNPAVKRILQEVKEMQNNPSDDYMSLPLEDNIFEWQFAIRGPRDTEFEGGIYHGRIQLPPDYPLKPPSFMLLTPNGRFETQTKICLSISNYHPEHWQPSWSVRAALVALIAFMPTKPEGAVGSLDYSKEERTALAIKSRTHPPKYGNADRQRLIDEVHEYMLNKSPRVPECCAVTNNQEACKQSVMSDVEDQANIVTAATAEHSQAGEPEMVGNVHDMHVNANASPTEVRVSGELRLSTEPVVELIQTEQRNQEVRNNSTIREQTMPDDRGLTLLAVGLCVAIIALLIKKFLKSYWWIGA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1250	13	86		0.999973
1383	25		75	0.996473
1384	25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain