SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14930

Length: 1055 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14930

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Defender against cell death 1 n=3 Tax=Picea RepID=DAD1_PICMA	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	defender against apoptotic death 1	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	93%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	93%
Blast2go	Various types of N-glycan biosynthesis	00513	93%
Blast2go	Metabolic pathways	01100	93%

Source	GOs	Term	Type	Identity
Blast2go	anti-apoptosis	GO:0006916	Biological Process	93%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	93%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	93%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	G %	T %	Probability
679		17	82	1.0
861	58		41	1.0
955		14	85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain