SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14928

Length: 1336 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14928

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin peroxidase n=1 Tax=Elaeis guineensis RepID=B3TLV1_ELAGV	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	2-cys peroxiredoxin-like protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxiredoxin.	EC:1.11.1.15	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Glutathione metabolism	00480		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Peroxidase.	EC:1.11.1.7	-	90%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	90%
Blast2go	Methane metabolism	00680	90%
Blast2go	Phenylpropanoid biosynthesis	00940	90%
Blast2go	Biosynthesis of phenylpropanoids	01061	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	90%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	90%
Blast2go	peroxiredoxin activity	GO:0051920	Molecular Function	90%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	90%
Blast2go	Thioredoxin fold	IPR012335	-	90%
Blast2go	Thioredoxin-like fold	IPR012336	-	90%
Blast2go	Thioredoxin-like	IPR017936	-	90%
Blast2go	Peroxiredoxin, C-terminal	IPR019479	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRA2

Fln msg:

Fln protein: MGICAHLQGFVLPFQFCGVASMASARSLSSPLLLSSTHERVRAGSSSSGRWRAPMGGLEGLWRVPKGAFEGLGKTFSTRLAGPRTAPACTSNIKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACGCAACTATTTAAGTGAGCGTTGGCTGCATGTTCC_-_ATGGGGATCTGCGCACATCTTCAGGGTTTTGTTCTTCCGTTCCAGTTTTGTGGAGTGGCATCCATGGCGTCTGCAAGATCTTTATCTTCCCCGCTACTGCTATCTTCTACTCACGAGAGAGTCAGGGCAGGTTCTTCATCGTCAGGCAGGTGGAGGGCACCGATGGGGGGTTTAGAAGGCCTGTGGAGAGTACCCAAGGGGGCGTTTGAAGGCCTTGGGAAGACCTTCAGCACACGATTGGCAGGCCCTCGGACCGCTCCCGCGTGCACCTCTAACATTAAAAGCAGCAACCTAGGGAGGAGGCTGGTCGTCAATGCTGGTGAACTTCCATTGGTTGGAAACAAGGCTCCTGATTTTGAAGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTCAAGCTGTCTGAATACATTGGGAAAAAATATGTTATTCTATTTTTCTATCCTTTGGACTTCACTTTTGTCTGCCCCACAGAAATCACTGCTTTCAGTGACAGATATTCTGAGTTTGAGAAGTTGAACACTGAAATTCTTGGTGTTTCTATTGATAGTGTGTTTTCTCACCTTGCTTGGGTTCAAACTGAAAGGAAAGCTGGCGGTCTTGGTGATTTGAAATATCCTCTGATATCTGATGTTACGAAGGGTATTTCAAAAGCCTACAATGTTTTGATTGCAGATCAGGGAATAGCATTACGCGGACTCTTTATTATTGACAAGGAGGGTGTGATTCAACACTCCACAATCAACAATCTAGCCATTGGTCGTAGTGTGGATGAAACGTTGCGTACATTACAAGCACTTCAATATGTTCAGGATAACCCCGATGAAGTTTGCCCAGCTGGGTGGAAGCCAGGAGACAAATCAATGAAGCCAGATCCCAAATTGAGTAAAGAATACTTTGAAGCTATCTGA___AAATCAAGATGAAAATTAAATATAGCGTTGGTCCATAGCGCTGCATTGTGGTCCAAGTGAAGGTTTACTGGGGATATCAAAGAATAAGGCATTCAATTTTGATTATTTTCTTGATATGTAGTTATTTTGATGTCGCCTACATTGAAGGCATGACTGCGAAGATCAACGTTTTTCAGTACGTGTTTAAGAAATCCTTTGCTATTTTTTTATCCAGCTCATATGATTCAACAATTGCTTGGAATCTTTCCGTTCCAAGTGTTTGATTCGTATAGCGTGTAAAGATGTATGGTAGAAGATTCAAGAATAAGGGCAGCGGCGGTCTTATAATAATATATTTAATTTTTATCATGTGCAAATTTCCATTCTAAG

Fln Alignment:

sp_v1.1_unigene14928___THEXXXXXXXXXXXXXXPMGGLEGLWRVPKGAFEGLGKTFSTRLAGPRTAPACTSNIKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI
A9NRA2_______________THERVKAGCSSSGRWRAPKGALEGLRRVPKGGFEGLGKAFSNRLAGPRTAAACTSNSKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEILGVSIDSVFSHLAWVQTDRKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
587		11		88	0.923564
945	97		2		0.964186
1212		9		90	1.0
1215		90		9	1.0
1217		9	90		1.0
1218			9	90	1.0
1317		11		88	0.923564
1321		14	85		0.993533
1322		80		20	0.995493
1324	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain