SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14920

Length: 1973 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14920
GTCAACGCAGAGTACATGGGGATGCTCAAGGGTGGTGGATCTGCTTCTAACACTTCTCTTCATTATTCGGCTTCAATTTCAGCAGCATGGATCCTTACAAGCATCGGCCATCAAGCGCTCACAACTCACCATACTTGACAACAAACCAAGGAGCGCCGGTGTGGAATAATAAATCTTCCTTGACCGTTGGACCGCGAGGTCCGGTTCTGCTTGAGGATTACCACCTGATCGAGAAGTTTGCAGCGTTTGACAGAGAACGAATTCCTGAGAGGGTCGTGCATGCCAGAGGGGCGTCTGCAAAGGGCTTTTTCGAGGTGACCCACTATGTCTCCGATCTCACCTGTGCAGATTTCATGAGGGCACCTGGCGTTCAGACCCCCGTGATTGTTCGGTTTTCTACTGTCATACATGAACGTGGGAGCCCGGAGACTATGAGAGACCCCAGGGGTTTCGCTGTCAAGTTTTACACGAGAGAAGGGAACTTCGACATTGTTGGAAACAATATTCCCGTTTTCTTCACTCGTGATGCCATGCAGTTTCCTGATGTTATTCGAGCTCTGAAGCCCAACCCGAAGACACACATTCAAGAGCCATGGCGCTACCTGGATTTCATGTCCCACCTCCCGGAGAGTTGTCTTACCTTCCTCTATTGGTTCGATGACTGGGGAATCCCTTCTGACTACCGCCACATGGATGGCTATGGCGTTCACACATTTAAGCTTATCAACAAAGAAGGTAGAGAAACCTACTGCAAGTTTCACTGGAAACCTACATGTGGATTGAAGTTTTTGCTCGACGAGGAAGCTGTGATCGTGGGAGGTAGCAATCACAGCCACGCTACCAAAGATTTAACTGATGCCATAGCTTCAGGAAACTACCCAGAATGGAAGCTCTTTATCCAGACAATGAATCCAGCGGATGAGGATAAGTTTGACTTTGATCCTCTAGATGATACTAAGATTTGGCCTGAGGATCTATTTCCCTTGCAGCCTGTGGGCCGGTTGGTTTTGAACAAGAACATTGACAACTTCTTCAATGAGAACGAAATGTTGGCATTCAATCCTGGTGCCATCGTTCCTGGCATATACTATACCAATGACAAAATGTTTCAGGTTCGAACGTTTGCATATGGAGACACACAGCGCCACAGGCTTGGCCCAAATTACATGCAGATCCCTGTGAACGCACCCAAATGTCCTAATTATAACAACCATCGGGACGGATTCATGAACTTTGTGCACAGAGATGAGGAAGTGGATTACTTCCCATCACGATACGATACCGTTCGACCTTCTGAAAAAGTGCCAATTCCTGCCGATGTTATCAGTGATCAAAGGGTTAAGACTGTCATTCCGAAAGAAAATAACTTCCAACAGTCAGGGGATCTCTTCCGGTCATGGCCACGGGACAGACAAGATAGATTTATAAAACGCTTCGCCGATGCGCTCTCTGATCCTAAAGTAACCCCTGAGGTCAGGAGCGTGTGGCTATCGTACTGGGCTCAGTGTGACAGGAGCCTTGGCCAGAGGTTGGCTTCTCGTATGGGGATGAAAGCTTCGTTGTAAGAAGATCATCCAGACGCTTTACATTGGCTGTTACGGCGTTTCGTTGTACAGTCTTCTAGTGTATTACAATAATTATTGCTCTGGGTGTGCCAGGGTCAATAATAATACTCGTTAAATATTTTGTGAAAAAGACCGTTGAAAGGTCTCCATTGAAACAATTTCAAACGCTGAGGTCTCCATCATCGGTATTTGGAAGTTAATAGTCTGATATATATATTTTTTAAGTCGCTATTATACTCCCCTTTTATTATCTAAATAACAAGATGGTACGTCTTCCCGCTGTTACGGAGCGCTTTTGAGATTGTAATCTTGGTGTATTTTATAGATATAAATCATGCTTTCTTTCCTGTGTTTTACATATAAATGATGATATTTTTATTATAAAAAAGTAGGATGGTTTGGATAAAC

Ace file of the UniGene sp_v1.1_unigene14920 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalase n=3 Tax=Picea sitchensis RepID=A9NUY8_PICSI	-	-	91%
FL-Next	sp=Catalase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	catalase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Catalase.	EC:1.11.1.6	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Tryptophan metabolism	00380	88%
Blast2go	Methane metabolism	00680	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	88%
Blast2go	response to light stimulus	GO:0009416	Biological Process	88%
Blast2go	response to cold	GO:0009409	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	88%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	88%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	88%
Blast2go	basic amino acid transmembrane transporter activity	GO:0015174	Molecular Function	88%
Blast2go	catalase activity	GO:0004096	Molecular Function	88%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	88%
Blast2go	heme binding	GO:0020037	Molecular Function	88%
Blast2go	cell wall	GO:0005618	Cellular Component	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%
Blast2go	apoplast	GO:0048046	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY8

Fln msg:

Fln protein: MDPYKHRPSSAHNSPYLTTNQGAPVWNNKSSLTVGPRGPVLLEDYHLIEKFAAFDRERIPERVVHARGASAKGFFEVTHYVSDLTCADFMRAPGVQTPVIVRFSTVIHERGSPETMRDPRGFAVKFYTREGNFDIVGNNIPVFFTRDAMQFPDVIRALKPNPKTHIQEPWRYLDFMSHLPESCLTFLYWFDDWGIPSDYRHMDGYGVHTFKLINKEGRETYCKFHWKPTCGLKFLLDEEAVIVGGSNHSHATKDLTDAIASGNYPEWKLFIQTMNPADEDKFDFDPLDDTKIWPEDLFPLQPVGRLVLNKNIDNFFNENEMLAFNPGAIVPGIYYTNDKMFQVRTFAYGDTQRHRLGPNYMQIPVNAPKCPNYNNHRDGFMNFVHRDEEVDYFPSRYDTVRPSEKVPIPADVISDQRVKTVIPKENNFQQSGDLFRSWPRDRQDRFIKRFADALSDPKVTPEVRSVWLSYWAQCDRSLGQRLASRMGMKASL*

Protein Length: 494

Fln nts: GTCAACGCAGAGTACATGGGGATGCTCAAGGGTGGTGGATCTGCTTCTAACACTTCTCTTCATTATTCGGCTTCAATTTCAGCAGC_-_ATGGATCCTTACAAGCATCGGCCATCAAGCGCTCACAACTCACCATACTTGACAACAAACCAAGGAGCGCCGGTGTGGAATAATAAATCTTCCTTGACCGTTGGACCGCGAGGTCCGGTTCTGCTTGAGGATTACCACCTGATCGAGAAGTTTGCAGCGTTTGACAGAGAACGAATTCCTGAGAGGGTCGTGCATGCCAGAGGGGCGTCTGCAAAGGGCTTTTTCGAGGTGACCCACTATGTCTCCGATCTCACCTGTGCAGATTTCATGAGGGCACCTGGCGTTCAGACCCCCGTGATTGTTCGGTTTTCTACTGTCATACATGAACGTGGGAGCCCGGAGACTATGAGAGACCCCAGGGGTTTCGCTGTCAAGTTTTACACGAGAGAAGGGAACTTCGACATTGTTGGAAACAATATTCCCGTTTTCTTCACTCGTGATGCCATGCAGTTTCCTGATGTTATTCGAGCTCTGAAGCCCAACCCGAAGACACACATTCAAGAGCCATGGCGCTACCTGGATTTCATGTCCCACCTCCCGGAGAGTTGTCTTACCTTCCTCTATTGGTTCGATGACTGGGGAATCCCTTCTGACTACCGCCACATGGATGGCTATGGCGTTCACACATTTAAGCTTATCAACAAAGAAGGTAGAGAAACCTACTGCAAGTTTCACTGGAAACCTACATGTGGATTGAAGTTTTTGCTCGACGAGGAAGCTGTGATCGTGGGAGGTAGCAATCACAGCCACGCTACCAAAGATTTAACTGATGCCATAGCTTCAGGAAACTACCCAGAATGGAAGCTCTTTATCCAGACAATGAATCCAGCGGATGAGGATAAGTTTGACTTTGATCCTCTAGATGATACTAAGATTTGGCCTGAGGATCTATTTCCCTTGCAGCCTGTGGGCCGGTTGGTTTTGAACAAGAACATTGACAACTTCTTCAATGAGAACGAAATGTTGGCATTCAATCCTGGTGCCATCGTTCCTGGCATATACTATACCAATGACAAAATGTTTCAGGTTCGAACGTTTGCATATGGAGACACACAGCGCCACAGGCTTGGCCCAAATTACATGCAGATCCCTGTGAACGCACCCAAATGTCCTAATTATAACAACCATCGGGACGGATTCATGAACTTTGTGCACAGAGATGAGGAAGTGGATTACTTCCCATCACGATACGATACCGTTCGACCTTCTGAAAAAGTGCCAATTCCTGCCGATGTTATCAGTGATCAAAGGGTTAAGACTGTCATTCCGAAAGAAAATAACTTCCAACAGTCAGGGGATCTCTTCCGGTCATGGCCACGGGACAGACAAGATAGATTTATAAAACGCTTCGCCGATGCGCTCTCTGATCCTAAAGTAACCCCTGAGGTCAGGAGCGTGTGGCTATCGTACTGGGCTCAGTGTGACAGGAGCCTTGGCCAGAGGTTGGCTTCTCGTATGGGGATGAAAGCTTCGTTGTAA___GAAGATCATCCAGACGCTTTACATTGGCTGTTACGGCGTTTCGTTGTACAGTCTTCTAGTGTATTACAATAATTATTGCTCTGGGTGTGCCAGGGTCAATAATAATACTCGTTAAATATTTTGTGAAAAAGACCGTTGAAAGGTCTCCATTGAAACAATTTCAAACGCTGAGGTCTCCATCATCGGTATTTGGAAGTTAATAGTCTGATATATATATTTTTTAAGTCGCTATTATACTCCCCTTTTATTATCTAAATAACAAGATGGTACGTCTTCCCGCTGTTACGGAGCGCTTTTGAGATTGTAATCTTGGTGTATTTTATAGATATAAATCATGCTTTCTTTCCTGTGTTTTACATATAAATGATGATATTTTTATTATAAAAAAGTAGGATGGTTTGGATAAAC

Fln Alignment:

sp_v1.1_unigene14920___MDPYKHRPSSAHNSPYLTTNQGAPVWNNKSSLTVGPRGPVLLEDYHLIEKFAAFDRERIPERVVHARGASAKGFFEVTHYVSDLTCADFMRAPGVQTPVIVRFSTVIHERGSPETMRDPRGFAVKFYTREGNFDIVGNNIPVFFTRDAMQFPDVIRALKPNPKTHIQEPWRYLDFMSHLPESCLTFLYWFDDWGIPSDYRHMDGYGVHTFKLINKEGRETYCKFHWKPTCGLKFLLDEEAVIVGGSNHSHATKDLTDAIASGNYPEWKLFIQTMNPAXXXXXXXXXXXDTKIWPEDLFPLQPVGRLVLNKNIDNFFNENEMLAFNPGAIVPGIYYTNDKMFQVRTFAYGDTQRHRLGPNYMQIPVNAPKCPNYNNHRDGFMNFVHRDEEVDYFPSRYDTVRPSEKVPIPADVISDQRVKTVIPKENNFQQSGDLFRSWPRDRQDRFIKRFADALSDPKVTPEVRSVWLSYWAQCDRSLGQRLASRMGMKASL
A9NUY8_______________MDPYKHRPSSAHNSPYLTTNQGAPVWNNTSSLTVGARGPVLLEDYHLIEKFAAFDRERIPERVVHARGASAKGFFEVTHHVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDIVGNNIPVFFTRDAMQFPDVIRALKPNPKTHIQEPWRYLDFMSHLPESCLTFLYWFDDWGIPSDYRHMDGYGVHTFKLITKEGRETYCKFHWKPTCGLKFLLDEEAVIVGGSNHSHATKDLTDAIASGNYPEWKLYIQTMDPADEDKLDFDPLDDTKIWPEDLFPLQPVGRLVLNKNIDNFFNENEMLAFNPGAIVPGIYYTNDKMFQTRTFAYADTQRHRLGPNYMQIPVNAPKCPHYNNHRDGFMNFLHRDEEVDYFPSRFDPVRASEKVPIPTDVITGRRVKTVIPKENNFKQSGELFRSWPRDRQERFIKRFADVASDPKVTPEIRSVWLSYWAQCDRGLGQRLASRLGMKALL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
611		0		95	0.999997
1666	75			25	0.996473
1948	50	50			1.0
1949		40	50	10	1.0
1950	44	55			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain