SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14919

Length: 1255 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14919

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SUMO-conjugating enzyme UBC9 n=101 Tax=Embryophyta RepID=UBC9_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	97%
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	97%
Blast2go	post-translational protein modification	GO:0043687	Biological Process	97%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	97%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	97%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	97%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPT0

Fln msg:

Fln protein: MASKRILKELKDLQKDPPTSCSAGPVADDMFHWQATIMGPPDSPYAGGVFVVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKNDKPKYESTARNWTQKYAMG*

Protein Length: 150

Fln nts: ATGGGGGGTTTTGAAGCCAAAGAGAACAAACCCCACTGGTAAAAGCCAATTAAACCGCACGCGTCCCTCTAAAAGAGGACAAGCCCCGCCGGTCACCCGTAGTAGGTGAGTCCAAATTTGAATAAATTTTGAGAGATTACTATTTATTCAAACGAATTGCCCATTTCATCCACACAATCTGACCTAGGCTTTCATCCATTCATTTTCTTCTTCGGTTTTTCTGTTCTGAGGAGTGAAGGGTTTGCACAACAGTTAGAGCTGCAGAC_-_ATGGCGTCTAAGAGGATTCTTAAGGAGCTCAAGGATTTGCAGAAGGATCCCCCGACATCTTGCAGCGCAGGTCCAGTGGCTGATGATATGTTTCATTGGCAAGCCACGATAATGGGACCTCCTGATAGTCCATATGCAGGGGGTGTATTCGTGGTTACTATTCATTTTCCTCCTGATTATCCATTTAAGCCTCCAAAGGTTGCATTCCGCACTAAGGTTTTCCACCCAAATATAAACAGCAATGGCAGTATCTGCCTGGACATCCTGAAAGAACAGTGGAGTCCTGCATTGACAATATCCAAGGTTTTATTGTCAATCTGCTCCTTGTTGACTGATCCAAACCCTGATGATCCACTCGTCCCTGAGATTGCTCACATGTACAAGAATGACAAGCCCAAGTACGAGTCAACTGCAAGAAACTGGACCCAAAAGTATGCAATGGGTTAG___ACTTGTTAGAAGAAACTTGTCATCTATAAAACTTCAGCCCCGGCTGAATTTGCTTTAAGGTCATGGTTATAAAACTAACCTTCTGTATGAAATGTTATTACAAAGCTTGGTTTCTCCAAATTTGCTCAGAATGGTTACCTGGGACAAGTGTTAGGCGTTATATTCTTTTTTGGAAGTGGATCCGTGTCTTTCAATATGATGATCAACTATTGGTGCTCTTACTTGTTCCATTATGTTAAGATATGAGCATTATTGGCATTTCTGACTTTACAAGCTTTGAGTTTTGCATGTAAGGATTTTATGCAATTCTATTCTGTGGCCTTAATCTATTAGATATTCAGACTTGGATGTTGTTTTCAGTAATTTGGAACTTTATCCATGTTAATATATCATGCGTGGATGGGTATTCACTTTTCTGGTATTACTCGGTGAAAGTCTGAAAGTGTGTTCTGTTGATGGTAACAAATACTTGCTGCTATATTTTGAGAGTCAATTGATGGTTGCTCTTTCAATAACTGATACCATATTGATTGCCAATATAA

Fln Alignment:

sp_v1.1_unigene14919___MASKRILKELKDLQKDPPTSCSAGPVADDMFHWQATIMGPPDSPYAGGVFVVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKNDKPKYESTARNWTQKYAMG
C0PPT0_______________MASKRILKELKDLQKDPPTSCSAGPVADDMFHWQATIMGPPDSPYAGGVFVVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKNDKPKYESTARNWTQKYAMG

SNPs (tot: 3)

Position	C %	T %	Probability
586	2	97	0.960269
1229	16	83	0.994512
1239	66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain