SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14917

Length: 714 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14917

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Pinus radiata RepID=O24485_PINRA	-	-	95%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	95%
Blast2go	lipid transfer protein	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	0.0	58%
Blast2go	lipid binding	GO:0008289	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	58%
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	58%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	58%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	58%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
201	11		88		0.923564
254		86		13	0.999973
676	10	90			1.0
680		7		92	0.999602
705		33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain