SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14907

Length: 1419 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14907

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	short chain alcohol	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	binding	GO:0005488	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Blast2go	Short-chain dehydrogenase/reductase SDR	IPR002198	-	78%
Blast2go	Glucose/ribitol dehydrogenase	IPR002347	-	78%
Blast2go	NAD(P)-binding domain	IPR016040	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU86

Fln msg:

Fln protein: MSIEEDDAFGACAGNLNIHAEQRLEGKVAIITGGASGIGEATVRLFTKHGGKVIIADVADVAGKKLAESLSPPAIFVHCDVTNEQDVGAAVDLAVEKHGQLDIMFNNAGIIAPGKSVAEFDMDQFDRVMKVNVRGVMVGMKHAARVMIPRKKGTIINTASITSVIGGLCPYDYTTSKHAVIGLTRNGAAELGKYGIRVNAVSPYGLPSDLTVGYFKKEGDPSAFSKEVDKPAVTDFCTRVANLEGTVLTAEDVAEACLYLASDESKYVSGHNLVVDGGISVVNHSWGTYR*

Protein Length: 292

Fln nts: ATGGGAGGATCGATTTTGACATGGTTGGGACGTGGTAGAGTTACAGTACATTAATATTCATGTACTGGTTTGGCTGTGATGGTTCTATAGTATTCCTTGCAAGGCCCTTATTACACAATATCTGCAGCAACCTCTCCCTGTAATTGCATCTGAGGCTTCCTGCGTCATCTAACTACCCAAATCTCGTTCCCAACC_-_ATGTCTATCGAAGAGGACGATGCATTTGGTGCCTGTGCTGGCAATCTCAACATTCATGCGGAGCAACGACTGGAGGGCAAGGTCGCAATAATAACGGGAGGAGCATCTGGCATCGGAGAAGCCACCGTTCGGCTCTTCACAAAGCACGGAGGCAAAGTCATAATCGCGGACGTTGCCGACGTAGCTGGGAAAAAGCTGGCCGAATCCCTTTCTCCTCCCGCAATTTTCGTGCACTGCGATGTGACCAATGAGCAAGACGTGGGCGCAGCAGTGGATTTGGCCGTAGAGAAACACGGTCAACTCGATATAATGTTTAACAACGCAGGAATAATAGCCCCAGGTAAAAGCGTAGCAGAGTTTGACATGGATCAATTCGATCGAGTGATGAAAGTAAACGTGAGAGGAGTGATGGTGGGCATGAAGCACGCTGCCCGCGTGATGATTCCGCGGAAGAAGGGCACCATAATCAACACTGCCAGCATTACAAGTGTTATAGGAGGACTTTGTCCATACGACTACACCACCTCCAAACATGCAGTGATAGGGCTGACGAGGAACGGCGCAGCTGAGCTTGGGAAATACGGGATCCGAGTCAACGCTGTGTCTCCTTATGGACTGCCCTCGGATCTTACTGTAGGGTATTTCAAGAAGGAAGGCGACCCCTCCGCATTTTCTAAAGAAGTGGATAAGCCCGCTGTGACGGACTTCTGCACCAGAGTTGCCAACTTAGAGGGAACGGTTCTTACAGCGGAGGATGTTGCAGAGGCATGTCTGTACTTGGCGAGCGATGAGTCTAAATATGTGAGCGGGCATAACCTTGTTGTCGACGGAGGAATCAGTGTTGTTAATCACTCCTGGGGAACCTACCGATGA___TAACTGAATGCTACTATTTGTTAATGAAATTAGCTCAGAGTCGAGTCGTAGTCCTACTATATAAATAACGCCGGTTCACAGCCGCTTCATCTGCTGGTTTTGGATTCCCTCTGAAATCGTTGTGACTTTTTAGTAACGTAGCCCTACTATATAAATAGTTGTGGTTCACCACTCCGTAACCCTACGATATAAATAATTACAGTTCAGCTCTGGTTCATTTGATGGTTTTGGTAAATGGCTGTCGCTTTCGTTAACTTGAAAGATGTCCTTTTGGCATTACATATTAATAATTATATATGATCACATACGTCATCATGGTATGTGATTTAAAAATATATATATTATTTGGGC

Fln Alignment:

sp_v1.1_unigene14907___MSIEEDDAFGACAGNLNIHAEQRLEGKVAIITGGASGIGEATVRLFTKHGGKVIIADVADVAGKKLAESLSPPAIFVHCDVTNEQDVGAAVDLAVEKHGQLDIMFNNAGIIAPGKSVAEFDMDQFDRVMKVNVRGVMVGMKHAARVMIPRKKGTIINTASITSVIGGLCPYDYTTSKHAVIGLTRNGAAELGKYGIRVNAVSPYGLPSDLTVGYFKKEGDPSAFSKEVDKPAVTDFCTRVANLEGTVLTAEDVAEACLYLASDESKYVSGHNLVVDGGISVVNHSWGTYR
A9NU86_______________MSNQEADAIGATVGNLDIHVEQRLNGRVAIITGGASGIGEAIVRLFTKHGAKVIIADIADEAGGKLAESLSPRGTYVHCDVSKEQDMSAAVDLAMEKHGQLDIMYNNAGILAAGKSVAEYDMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIINTASVVSIVGGLTPYSYTASKHAVIGLTKNGAAELGKYGIRVNAVSPYGLATALTVEYF-KEGDASSSASEIDKAAVDAFCDGVANLEGTILKVEDVAEAGLYLASDEAKYVSGHNLVVDGGITVVNHSWKTYR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1024		92	8		0.999718
1141		90		10	0.999898
1152	84	10			0.999846
1155		89		10	0.999919
1271	42		57		1.0
1275		23		76	1.0
1288		89		10	0.999919
1289	42		57		1.0
1292	12		6	62	1.0
1294	75		25		1.0
1295	25			75	1.0
1296	8		66	25	1.0
1298		9	27	63	1.0
1299	10			90	0.90298
1300		10		90	0.90298
1303		11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain