SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14895

Length: 2932 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14895
CGTCGTGACCTTGGCTGTCACTCAATTCGGCGAGATAAGGCCACCAGCAATATCTGCACGGCACAGGCCTTGCTAGCAAACATGTCTGCGATGTACGCAGTCTATCATGGTCCAGAAGGGTTGAAAAGGATTGCAGAGCGCGTACATGGTCTGGCAGGAGCTCTTGCAGTTGGATTGAAGAAATTGGGCACTGCGACTGTTGAGGAAGTTCCCTTCTTTGATACAGTAAAGATCAAATGTGCCGATGCCAAGGCCATTTATGATACAGCTCTTGAGAATGAGATGAATATCCGAATTGTAGATTCAAAGACGGTTGCTGTTTCCTTTGATGAGACTACTACGTTGGAGGATGTAGATAAGCTACTGAAAGTTTTTGCTGGCAATAAATCTGTAAACTTCACAGCAGACTCCCTTGCCCCGGAAGTCCAAGTTGCAATTCCAAAAGCTTTTATCCGGGAGAGTGCTTATTTGACACATCCAATTTTCAACATGTACCACACAGAGCATGAGCTACTGCGCTACCTCCATAGGTTACAGGCAAAAGATCTTTCTTTGTGCCACAGTATGATTCCCTTAGGATCCTGCACTATGAAATTGAATGCAACTGTGGAGATGATGCCTGTTACTTGGCCAAGTTTTTCTGACATGCACCCTTTTGCACCTCAAGATCAAGCTGCTGGTTATCAGGAGATGTTCAAAGATTTGGGAGAGCTTCTTTGTGACATTACTGGGTTTGATTCGTTCTCTCTGCAACCAAATGCTGGTGCAGCAGGGGAGTATGCTGGACTGATGGTTATTCGTGCTTATCATCAAGCAAGAGGAGAGGGGCACAGGAATGTCTGTATTATTCCTGTATCTGCTCATGGAACGAATCCTGCAAGTGCTGCTATGTGTGGCATGAAAATTGTTTCTGTTGGCACGGATGCTAAAGGAAATATTAACATCGAGGAACTAAAGAAAGCTTCTGAGATGCACAAGGAAAACCTTTCAGCACTTATGGTGACCTATCCTTCAACCCATGGTGTGTATGAGGAGGGTATTGATACCATATGCAAGATCATCCATGAAAATGGGGGCCAGGTTTACATGGATGGGGCAAACATGAATGCACAGGTGGGGCTGACAAGTCCAGGTTATATTGGAGCTGATGTTTGTCACCTTAATCTTCATAAGACTTTCTGCATTCCACATGGAGGTGGCGGACCTGGTATGGGGCCGATTGGAGTGAAGAAGCACTTAGCACCATTTTTACCATCACATCCAGTGGTTCCTACGGGGGGAATTCCTGCTCCTGAAGGCAAGCAACAACCGCTTGGTACTATATCTGCTGCACCTTGGGGCTCTGCTCTGATTTTGCCAATATCATATTCCTACATTGCAATGATGGGTTCAGAAGGGCTTACTGCAGCATCAAAAGTAGCTATTTTGAATGCAAACTACATGGCTAAACGACTAGAGGATTACTATCCTGTACTTTTCCGAGGAGTAAATGGTACATGTGCTCATGAATTCATTATTGATTTAAGACATTTCAAGGTGTCTGCTGGAATAGAACCAGAAGATGTTGCTAAAAGACTTATGGACTATGGATTCCATGCACCTACAATGTCCTGGCCGGTGCCAGGCACTTTGATGATTGAACCCACAGAAAGTGAAAGCAAGGCAGAGCTGGACAGGTTTTGTAATGCACTTATCTCAATCAGAAAGGAAATAATGGAAATTGAGAATGGGAAAGTGGATCCTCACCACAATGTTCTCAAGGGAGCTCCCCATCCGGCAGCTTTAGTGATGTCAGATGAATGGAACAAACCTTATTCGAGGGAGGTTGCTGCTTTCCCTGCTTCGTGGGTTCGTGCTTCCAAGTTCTGGCCTTCAACAGGACGAGTGGACAATGTCTATGGTGACCGCAACCTTGTCTGCACACTTAATCAAGCAGGAGGAGATGTGGTTGAAGAGCAGGCAGTTGCTGCACAGGTGTAGGATAAATTGCAACTCAACTATTGTTCCAAGGGGCTGAATCAAAGTTACTGTTATTGGATATACTATTTTATTCTTAACATGGCACTTGCATTCTATCCAAGGGTGTATCTTAGTAGTTTGAAGCTTCAAGCTAAGCTGTTCGAAGTCAATCAGTGAGCTGAACTTAATTAATAATACAAAATATTGTTCTTACAAGGCCTTAAAAGGTTTCTGGAGGTTCTGCAAAGAACCGTAAGGATTTCACATTTAACCACCAATTGGATTACAAAACAATGATGCGACTTAAACAAAACAGAGCCTGGTGTCTTTATCTCAGAGACAACTAGTTGACCACAAAGAGATAGATGCATCTGAAAAAGATCTGAAAAAATACAACAGGAGCATATCAATCAAGATGAATCCAATACTTTTCAAAGAATTTATTAGAGTTGTTTCTATGTGCCTATAGTTTCAGAGTTGTTTTATGTGCCTATAGTTTCGTCTGTCAGTATTGATGGAATACTAGAAACATTACATGATTGCTAGTATTTCCAGGGGAGAGAAGGGTTCACGCGTCTAACTGCTCTCTATAGCTTGATCTATCTTCCCGGGGTAATCATATGGAAACCATCAACATTCTAGTATTGATGATAAATTGCTTGTAGAATGCCACTCGGCCTAAATTGGAGTTTGGAAGGAATGACCGCAATAAGAGCACTTCAATTCTAAAAAAATTAGAGTTAGAGTTGGTTCAAGCAAGAAGAGTCGGTCAACAAATCAATTGCCAGGTCTCTAGCTTGCAAATAAGCTTCATCTATGCATTACCGAACACTCTTCGTTGTTAGCATCACGAGTATTTAATCAGTAGTTTCATTGATTTATGTGTCACAAGTTGGATTACCATGACATTAATTTAGATACAATTTGTCAGTAGATTCAATCTGTGTCAGAAGTGTCATTATCATGACATTAT

Ace file of the UniGene sp_v1.1_unigene14895

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycine dehydrogenase, putative (EC:1.3.1.74); K00281 glycine dehydrogenase [EC:1.4.4.2]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glycine dehydrogenase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycine dehydrogenase (decarboxylating).	EC:1.4.4.2	-	0.0	91%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		91%
Blast2go	Metabolic pathways	01100		91%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	91%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glycine dehydrogenase (decarboxylating).	EC:1.4.4.2	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycine, serine and threonine metabolism	00260		0.0	79%
AutoFact	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	glycine decarboxylation via glycine cleavage system	GO:0019464	Biological Process	91%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	91%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	glycine dehydrogenase (decarboxylating) activity	GO:0004375	Molecular Function	91%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	91%
Blast2go	glycine cleavage complex	GO:0005960	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ48

Fln msg: your sequence is shorter than subject: 660 - 780

Fln protein: RRDLGCHSIRRDKATSNICTAQALLANMSAMYAVYHGPEGLKRIAERVHGLAGALAVGLKKLGTATVEEVPFFDTVKIKCADAKAIYDTALENEMNIRIVDSKTVAVSFDETTTLEDVDKLLKVFAGNKSVNFTADSLAPEVQVAIPKAFIRESAYLTHPIFNMYHTEHELLRYLHRLQAKDLSLCHSMIPLGSCTMKLNATVEMMPVTWPSFSDMHPFAPQDQAAGYQEMFKDLGELLCDITGFDSFSLQPNAGAAGEYAGLMVIRAYHQARGEGHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELKKASEMHKENLSALMVTYPSTHGVYEEGIDTICKIIHENGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPEGKQQPLGTISAAPWGSALILPISYSYIAMMGSEGLTAASKVAILNANYMAKRLEDYYPVLFRGVNGTCAHEFIIDLRHFKVSAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCNALISIRKEIMEIENGKVDPHHNVLKGAPHPAALVMSDEWNKPYSREVAAFPASWVRASKFWPSTGRVDNVYGDRNLVCTLNQAGGDVVEEQAVAAQV*

Protein Length: 661

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGGCGAGATAAGGCCACCAGCAATATCTGCACGGCACAGGCCTTGCTAGCAAACATGTCTGCGATGTACGCAGTCTATCATGGTCCAGAAGGGTTGAAAAGGATTGCAGAGCGCGTACATGGTCTGGCAGGAGCTCTTGCAGTTGGATTGAAGAAATTGGGCACTGCGACTGTTGAGGAAGTTCCCTTCTTTGATACAGTAAAGATCAAATGTGCCGATGCCAAGGCCATTTATGATACAGCTCTTGAGAATGAGATGAATATCCGAATTGTAGATTCAAAGACGGTTGCTGTTTCCTTTGATGAGACTACTACGTTGGAGGATGTAGATAAGCTACTGAAAGTTTTTGCTGGCAATAAATCTGTAAACTTCACAGCAGACTCCCTTGCCCCGGAAGTCCAAGTTGCAATTCCAAAAGCTTTTATCCGGGAGAGTGCTTATTTGACACATCCAATTTTCAACATGTACCACACAGAGCATGAGCTACTGCGCTACCTCCATAGGTTACAGGCAAAAGATCTTTCTTTGTGCCACAGTATGATTCCCTTAGGATCCTGCACTATGAAATTGAATGCAACTGTGGAGATGATGCCTGTTACTTGGCCAAGTTTTTCTGACATGCACCCTTTTGCACCTCAAGATCAAGCTGCTGGTTATCAGGAGATGTTCAAAGATTTGGGAGAGCTTCTTTGTGACATTACTGGGTTTGATTCGTTCTCTCTGCAACCAAATGCTGGTGCAGCAGGGGAGTATGCTGGACTGATGGTTATTCGTGCTTATCATCAAGCAAGAGGAGAGGGGCACAGGAATGTCTGTATTATTCCTGTATCTGCTCATGGAACGAATCCTGCAAGTGCTGCTATGTGTGGCATGAAAATTGTTTCTGTTGGCACGGATGCTAAAGGAAATATTAACATCGAGGAACTAAAGAAAGCTTCTGAGATGCACAAGGAAAACCTTTCAGCACTTATGGTGACCTATCCTTCAACCCATGGTGTGTATGAGGAGGGTATTGATACCATATGCAAGATCATCCATGAAAATGGGGGCCAGGTTTACATGGATGGGGCAAACATGAATGCACAGGTGGGGCTGACAAGTCCAGGTTATATTGGAGCTGATGTTTGTCACCTTAATCTTCATAAGACTTTCTGCATTCCACATGGAGGTGGCGGACCTGGTATGGGGCCGATTGGAGTGAAGAAGCACTTAGCACCATTTTTACCATCACATCCAGTGGTTCCTACGGGGGGAATTCCTGCTCCTGAAGGCAAGCAACAACCGCTTGGTACTATATCTGCTGCACCTTGGGGCTCTGCTCTGATTTTGCCAATATCATATTCCTACATTGCAATGATGGGTTCAGAAGGGCTTACTGCAGCATCAAAAGTAGCTATTTTGAATGCAAACTACATGGCTAAACGACTAGAGGATTACTATCCTGTACTTTTCCGAGGAGTAAATGGTACATGTGCTCATGAATTCATTATTGATTTAAGACATTTCAAGGTGTCTGCTGGAATAGAACCAGAAGATGTTGCTAAAAGACTTATGGACTATGGATTCCATGCACCTACAATGTCCTGGCCGGTGCCAGGCACTTTGATGATTGAACCCACAGAAAGTGAAAGCAAGGCAGAGCTGGACAGGTTTTGTAATGCACTTATCTCAATCAGAAAGGAAATAATGGAAATTGAGAATGGGAAAGTGGATCCTCACCACAATGTTCTCAAGGGAGCTCCCCATCCGGCAGCTTTAGTGATGTCAGATGAATGGAACAAACCTTATTCGAGGGAGGTTGCTGCTTTCCCTGCTTCGTGGGTTCGTGCTTCCAAGTTCTGGCCTTCAACAGGACGAGTGGACAATGTCTATGGTGACCGCAACCTTGTCTGCACACTTAATCAAGCAGGAGGAGATGTGGTTGAAGAGCAGGCAGTTGCTGCACAGGTGTAG___GATAAATTGCAACTCAACTATTGTTCCAAGGGGCTGAATCAAAGTTACTGTTATTGGATATACTATTTTATTCTTAACATGGCACTTGCATTCTATCCAAGGGTGTATCTTAGTAGTTTGAAGCTTCAAGCTAAGCTGTTCGAAGTCAATCAGTGAGCTGAACTTAATTAATAATACAAAATATTGTTCTTACAAGGCCTTAAAAGGTTTCTGGAGGTTCTGCAAAGAACCGTAAGGATTTCACATTTAACCACCAATTGGATTACAAAACAATGATGCGACTTAAACAAAACAGAGCCTGGTGTCTTTATCTCAGAGACAACTAGTTGACCACAAAGAGATAGATGCATCTGAAAAAGATCTGAAAAAATACAACAGGAGCATATCAATCAAGATGAATCCAATACTTTTCAAAGAATTTATTAGAGTTGTTTCTATGTGCCTATAGTTTCAGAGTTGTTTTATGTGCCTATAGTTTCGTCTGTCAGTATTGATGGAATACTAGAAACATTACATGATTGCTAGTATTTCCAGGGGAGAGAAGGGTTCACGCGTCTAACTGCTCTCTATAGCTTGATCTATCTTCCCGGGGTAATCATATGGAAACCATCAACATTCTAGTATTGATGATAAATTGCTTGTAGAATGCCACTCGGCCTAAATTGGAGTTTGGAAGGAATGACCGCAATAAGAGCACTTCAATTCTAAAAAAATTAGAGTTAGAGTTGGTTCAAGCAAGAAGAGTCGGTCAACAAATCAATTGCCAGGTCTCTAGCTTGCAAATAAGCTTCATCTATGCATTACCGAACACTCTTCGTTGTTAGCATCACGAGTATTTAATCAGTAGTTTCATTGATTTATGTGTCACAAGTTGGATTACCATGACATTAATTTAGATACAATTTGTCAGTAGATTCAATCTGTGTCAGAAGTGTCATTATCATGACATTAT

Fln Alignment:

sp_v1.1_unigene14895___IRRDKATSNICTAQALLANMSAMYAVYHGPEGLKRIAERVHXXXXXXXXXXXXXXXXTVEEVPFFDTVKIKCADAKAIYDTALENEMNIRIVDSKTVAVSFDETTTLEDVDKLLKVFAGNKSVNFTADSLAPEVQVAIPKAFIRESAYLTHPIFNMYHTEHELLRYLHRLQAKDLSLCHSMIPLGSCTMKLNATVEMMPVTWPSFSDMHPFAPQDQAAGYQEMFKDLGELLCDITGFDSFSLQPNAGAAGEYAGLMVIRAYHQARGEGHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELKKASEMHKENLSALMVTYPSTHGVYEEGIDTICKIIHENGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVPTGGIPAPEGKQQPLGTISAAPWGSALILPISYSYIAMMGSEGLTAASKVAILNANYMAKRLEDYYPVLFRGVNGTCAHEFIIDLRHFKVSAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCNALISIRKEIMEIENGKVDPHHNVLKGAPHPAALVMSDEWNKPYSREVAAFPASWVRASKFWPSTGRVDNVYGDRNLVCTLNQ
C0PQ48_______________IRRDKATSNICTAQALLANMSAMYAVYHGPEGLKKIAERVHGLAGALVVGLKKLGTATVEDVPFFDTVKIKCADAKAIYDTALENEINIRVVDSKTVTVSFDETTTLEDVDKLLKVFAGNKSVNFTADSLAPEVQVAIPKAFIRESAYLTHPIFNMYHAEHELLRYLHRLQAKDLSLCHSMIPLGSCTMKLNATVEMMPVTWPNFSDMHPFAPQDQAAGYQEMFKDLGDLLCDITGFDSFSLQPNAGAAGEYAGLMVIRAYHQARGEGHRNVCIIPVSAHGTNPASAAMCGMQIVSVGTDAKGNINIEELRRASETHKDNLSALMVTYPSTHGVYEEGIDTICKIIHENGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPEDKLQPLGTISAAPWGSALILPISYAYIAMMGSQGLTEASKLAILNANYMAKRLEDYYPVLFRGENGTCAHEFIIDLRHFKVSAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCNALISIRKEIMAIETGKMDSHHNVLKGAPHPASVVMADEWNRPYSREVAAFPASWVRASKFWPSTGRVDNVYGDRNLVCTLLQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
2163	77		22		1.0
2170	1	4		92	0.999649
2180	5			94	0.9982
2181	5			94	0.9982
2427	90		10		0.90298
2430			10	90	0.90298
2434		11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain