SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14892

Length: 1992 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14892
CGTCGTGACCTTGGCTGTCACTCAACTGCGTCGTGATACTGCACGCATTGTTGGTTTTGAAGTCATGCCATACAGTGTGAAGCATGAATATGAACAACCTTGGGATCCTGAGAAACCACGTTTAACAACTTGCAATGCAAATACAAAGCGTTATGTTTCAGGTGTTGATACTCCCCAGGAAGTGGAGGAGGGTAAAGAGGTCATCTTCACGTATGATGTTATCTTCGAGGAAAGTCCCGTGAAATGGGCATCCCGATGGGATACATACCTTCTGATGACAGATGATCAGATACACTGGTTCTCCATTATTAATTCACTGATGATTGTTCTCTTCCTCTCTGGCATGGTGGCAATGATCATGATGAGAACTTTGTATAGGGATATCTCAAAATACAACCAGTTGGAGACACAAGACGAAGCACAAGAAGAAACAGGATGGAAATTGGTCCATGGAGATGTGTTCAGGCCCCCTACTCATTCGAGCTTGCTTTGTGTGTATGTGGGAACTGGTGTTCAGTTTTTTGGAATGACACTTGTTACAATGATATTTGCTATGCTTGGTTTCCTTTCTCCTTCCAACCGTGGTGGGTTGATGACAGCTATGGTTCTATTGTGGGTGTTCATGGGTTTGTTCGCTGGCTACTCCTCTGCCCGGCTATATAAGATGTTCAAGGGCGCAGAATGGAAGAAAAACACACTAAAGACTGCTTTCACGTTTCCTGGAATCGTTTTCTGCATTTTCTTTGTATTGAATGCATTGATCTGGGGTGAGAAATCTTCTGGTGCTGTACCTTTTGGGACTATGTTTGCTTTGGTCTTTTTGTGGTTTGGAATTTCCGTGCCCTTGGTTTTTATTGGCAGCTACTTTGGCTACAAGAAACCTGCAATTGAAGATCCAGTGAAAACAAACAAAATTCCCAGGCAAATTCCTGAACAGGCTTGGTACATGCAGCCTGTTTTCTCCGTACTCATTGGCGGCATATTACCGTTTGGTGCTGTTTTCATTGAGCTGTTTTTCATCCTGACTTCCATATGGCTGAATCAGTTCTACTACATCTTTGGGTTCTTGTTCATAGTCTTTGTTATCCTGCTTGTCACCTGCGCAGAGATTACCATTGTTCTCTGCTACTTCCAGCTGTGCAGTGAAGATTATCACTGGTGGTGGAGAGCATATCTGACTTCAGGCTCTTCAGCGCTCTACCTGTTTCTATATGCAATATTTTACTTCTTCACGAAACTGGAGATTACTAAACTTGTTTCTGCCTTTTTGTACTTTGGCTACATGACGATCATTTCATATGCTTTCTTTGTATTGACGGGTACTATAGGCTTCTATGCATGCTTCTGGTTCGTCCGAAAAATTTACTCATCGGTGAAGATTGACTAAAGCTGTTTGGCATGGCTAGTAGTTTTTTCGAAATCACCAAGGATATAGTCAATGACAAGGAAGCAGAGAATATTAACGTGTACAAGTTACTCATTATTCGCAACTGCCAGGTCGCAAGCAAAGAAAAGGCCGGCTTGTAGAAAAGTACATCTGTGTGGTGAATTCTACTACTCGGTGCCTTCTTTATGATGAAGGCCACCAATTTGTTGAAGCCACTATGAAAATTTGTGTTAATTTGCTTTGCATTGAGAAAATTGTGTTAGTAATAACATTTATTTCTTTGATTCTCAGATTCAAATTTATTTTGATCAAAAGTCATCCAGCTAGGGTTTTGTGTTATCAATAGCAGGAAATGCAACATTATTTTGAGTCTGAATATTTGCGTTTTCTTTGGGTGCGAAAGATTTCAGTCGTTTCTTTTAGTTATAGGGTACTGAGTGATTCTTTTTGTCAAATATTATGTGGAGTGCACTAATGATTGATTTGAGGCTTATTTAGTTGACAGCTACAAGGCTTTTGGTGACTGGTAGTATCCTGTGAATATACGAGTAGTCAACATGTTTTATGCCATCAGTGTGGAATCATATGTGGATTTTCGTATTCAT

Ace file of the UniGene sp_v1.1_unigene14892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	endomembrane protein 70, putative [Arabidopsis thaliana] dbj\|BAB01926.1\| multispanning membrane protein-like [Arabidopsis thaliana]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: your sequence is longer than subject: 441 - 370

Fln protein: MPYSVKHEYEQPWDPEKPRLTTCNANTKRYVSGVDTPQEVEEGKEVIFTYDVIFEESPVKWASRWDTYLLMTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGAEWKKNTLKTAFTFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSAFLYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID*

Protein Length: 442

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTGCGTCGTGATACTGCACGCATTGTTGGTTTTGAAGTC_-_ATGCCATACAGTGTGAAGCATGAATATGAACAACCTTGGGATCCTGAGAAACCACGTTTAACAACTTGCAATGCAAATACAAAGCGTTATGTTTCAGGTGTTGATACTCCCCAGGAAGTGGAGGAGGGTAAAGAGGTCATCTTCACGTATGATGTTATCTTCGAGGAAAGTCCCGTGAAATGGGCATCCCGATGGGATACATACCTTCTGATGACAGATGATCAGATACACTGGTTCTCCATTATTAATTCACTGATGATTGTTCTCTTCCTCTCTGGCATGGTGGCAATGATCATGATGAGAACTTTGTATAGGGATATCTCAAAATACAACCAGTTGGAGACACAAGACGAAGCACAAGAAGAAACAGGATGGAAATTGGTCCATGGAGATGTGTTCAGGCCCCCTACTCATTCGAGCTTGCTTTGTGTGTATGTGGGAACTGGTGTTCAGTTTTTTGGAATGACACTTGTTACAATGATATTTGCTATGCTTGGTTTCCTTTCTCCTTCCAACCGTGGTGGGTTGATGACAGCTATGGTTCTATTGTGGGTGTTCATGGGTTTGTTCGCTGGCTACTCCTCTGCCCGGCTATATAAGATGTTCAAGGGCGCAGAATGGAAGAAAAACACACTAAAGACTGCTTTCACGTTTCCTGGAATCGTTTTCTGCATTTTCTTTGTATTGAATGCATTGATCTGGGGTGAGAAATCTTCTGGTGCTGTACCTTTTGGGACTATGTTTGCTTTGGTCTTTTTGTGGTTTGGAATTTCCGTGCCCTTGGTTTTTATTGGCAGCTACTTTGGCTACAAGAAACCTGCAATTGAAGATCCAGTGAAAACAAACAAAATTCCCAGGCAAATTCCTGAACAGGCTTGGTACATGCAGCCTGTTTTCTCCGTACTCATTGGCGGCATATTACCGTTTGGTGCTGTTTTCATTGAGCTGTTTTTCATCCTGACTTCCATATGGCTGAATCAGTTCTACTACATCTTTGGGTTCTTGTTCATAGTCTTTGTTATCCTGCTTGTCACCTGCGCAGAGATTACCATTGTTCTCTGCTACTTCCAGCTGTGCAGTGAAGATTATCACTGGTGGTGGAGAGCATATCTGACTTCAGGCTCTTCAGCGCTCTACCTGTTTCTATATGCAATATTTTACTTCTTCACGAAACTGGAGATTACTAAACTTGTTTCTGCCTTTTTGTACTTTGGCTACATGACGATCATTTCATATGCTTTCTTTGTATTGACGGGTACTATAGGCTTCTATGCATGCTTCTGGTTCGTCCGAAAAATTTACTCATCGGTGAAGATTGACTAA___AGCTGTTTGGCATGGCTAGTAGTTTTTTCGAAATCACCAAGGATATAGTCAATGACAAGGAAGCAGAGAATATTAACGTGTACAAGTTACTCATTATTCGCAACTGCCAGGTCGCAAGCAAAGAAAAGGCCGGCTTGTAGAAAAGTACATCTGTGTGGTGAATTCTACTACTCGGTGCCTTCTTTATGATGAAGGCCACCAATTTGTTGAAGCCACTATGAAAATTTGTGTTAATTTGCTTTGCATTGAGAAAATTGTGTTAGTAATAACATTTATTTCTTTGATTCTCAGATTCAAATTTATTTTGATCAAAAGTCATCCAGCTAGGGTTTTGTGTTATCAATAGCAGGAAATGCAACATTATTTTGAGTCTGAATATTTGCGTTTTCTTTGGGTGCGAAAGATTTCAGTCGTTTCTTTTAGTTATAGGGTACTGAGTGATTCTTTTTGTCAAATATTATGTGGAGTGCACTAATGATTGATTTGAGGCTTATTTAGTTGACAGCTACAAGGCTTTTGGTGACTGGTAGTATCCTGTGAATATACGAGTAGTCAACATGTTTTATGCCATCAGTGTGGAATCATATGTGGATTTTCGTATTCAT

Fln Alignment:

sp_v1.1_unigene14892___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGAEWKKNTLKTAFTFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSXXXXXXXXXXXXXTKLEITKLVSAFLYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID
D5AC25_______________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1203		14		85	0.993533
1265	1			88	1.0
1269	1			94	1.0
1405	94			5	0.997984
1408	94		5		0.998894
1409		8	4	64	1.0
1410	8			92	0.999718
1412			8	92	0.999718
1413			8	92	0.999718
1414		8		92	0.999718
1416	8	92			0.999718
1418	87			12	1.0
1608	56		43		1.0
1714			87	12	0.992554
1715		12	87		0.992554
1717		12		87	0.992554
1718	12			87	0.992554
1719			12	87	0.992554
1722	12			87	0.992554
1725			12	87	0.992554
1732	87		12		0.992554
1735	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain