SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14883

Length: 1821 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14883

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-associated (UBA)/TS-N domain-containing protein	-	-	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	74%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	79%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	79%
Blast2go	PUG domain	IPR006567	-	79%
Blast2go	Zinc finger, C2H2	IPR007087	-	79%
Blast2go	UBA-like	IPR009060	-	79%
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	79%
Blast2go	PUB domain	IPR018997	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IJJ3

Fln msg:

Fln protein: MAGLSLMCGDCGHQLRSVQEAQEHAELTGHANFSESTEAVLNLVCTACGKPCRSKTETDLHTKRTGHSEFTDKTEEAAKPIDLEAKSEPLPSSSEPVAGEDIVVSEGMEMVVPDVNKELLAELEAMGFPTARATRALHFTGNDNIEAAVNWVVENENDPEIDHMPMVPAQAKAEPAKATLSSEEIKAKTQELRERARKKKEEEDKRMEREREKERIRIGKELLEAKRIEEDNERKRILALRKAEKDEEKRAREKIRQRIEEDKAERRRKLGLPAEDPNKVKTPPPAAEETKISLPVRPATKAEQMRNCLRSLKQSHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNPSFQERVGSLNGGVQFLELCGFVKDESAEILFLPRDKVDMPILNSAGAELNSAIVNPFFGVL*

Protein Length: 417

Fln nts: CGTCGTGACGTTGAGacGtGGgaCAAGTTAGACTCGTCGGATTGTCAAAACATGGAATCAGGAAAGTGCAAAAGGGCAGGGTGCCTAAATAAAAGCCAGAAGCCTCTGATTCTCTGAAGTAAAGCACAGCAAAGGAATAAGTTCTAGGATCGGAATAAGTTCTAGATCGAAATCTGTGGGCACCTTGAAGAGTCGGTGGTC_-_ATGGCGGGTCTTTCGCTAATGTGTGGGGACTGCGGGCACCAGCTAAGAAGCGTACAGGAAGCCCAAGAGCATGCGGAACTAACTGGCCACGCCAACTTTTCTGAATCCACTGAAGCTGTGCTTAATCTGGTGTGCACTGCCTGCGGGAAGCCCTGCCGCTCCAAAACCGAGACTGACTTGCATACTAAGAGAACAGGCCACAGCGAGTTCACGGATAAAACTGAGGAGGCTGCGAAGCCCATTGATTTAGAGGCTAAAAGCGAACCCTTGCCTAGCTCATCTGAACCTGTAGCTGGAGAGGATATCGTCGTGTCTGAAGGTATGGAGATGGTGGTTCCAGATGTCAACAAAGAGTTACTGGCAGAACTTGAAGCGATGGGATTTCCCACAGCCCGTGCAACTCGTGCACTTCATTTTACAGGCAATGATAATATCGAGGCTGCTGTGAATTGGGTGGTGGAAAATGAAAATGATCCAGAAATTGATCATATGCCGATGGTACCTGCCCAAGCAAAAGCTGAGCCTGCAAAGGCAACATTGTCTTCAGAGGAAATAAAAGCAAAGACACAAGAACTACGAGAGCGTGCCCGTAAAAAGAAAGAAGAGGAGGACAAACGAATGGAAAGGGAACGAGAAAAGGAACGGATTCGGATTGGCAAGGAACTGTTGGAAGCAAAACGAATTGAAGAAGATAATGAACGGAAACGCATATTAGCTTTAAGGAAAGCAGAAAAGGATGAGGAAAAACGAGCTCGAGAGAAGATAAGGCAGCGGATAGAGGAGGATAAGGCTGAGAGAAGGCGGAAGTTAGGATTGCCTGCTGAAGACCCAAATAAAGTTAAAACTCCCCCACCTGCAGCTGAGGAAACAAAGATTTCATTGCCAGTGAGACCAGCAACAAAGGCAGAACAAATGCGTAACTGTCTCCGCTCGCTTAAACAGAGCCATAAGGAAGATGATGCAAAAGTGAAGAGAGCATTCCAAACTCTTCTGACATACGTAGGTAATGTTGCAAAAAATCCAGATGAGGAGAAGTTTCGAAAAATTCGTCTCAGCAATCCCTCATTCCAGGAACGAGTGGGAAGCTTGAATGGAGGAGTGCAGTTTCTTGAGCTATGTGGCTTTGTGAAGGACGAAAGTGCTGAAATTTTGTTTTTGCCTCGAGATAAAGTGGACATGCCAATACTGAATTCAGCTGGAGCAGAGCTGAATTCTGCCATAGTTAATCCCTTCTTTGGTGTTCTTTAG___TCCTGTCTGGACAACCTTGTTAGCACAGATATTGAAAAAGAAAAGGGCACTAATTATTCTGATGCGAGCCTAGTGCTTATATATGCAAATATCTAAAAGTGGGTATTTTTGAGAGAGCTATTTCTTTTTTCTGAACGTTCACATTAAAGTACAGAATGTATTCCCATAAATAGGTGATACATCTTCTTGAGAATGATCCAATTTACCCACCATTTCAGGGGCTGAGTGATTGATTGTTCCATGCTTTTAACTTTCTTTCCACAGTAGTTTTCAGTTATTTTGGATGAATGTATTGTACCATCGTAGTTTTAAACATTTCTGAATAAAATAGAGGAAGTATCAAAAGATGCATTCCTGCCACAATATGCTTTT

Fln Alignment:

sp_v1.1_unigene14883___MAGLSLMCGDCGHQLRSVQEAQEHAELTGHANFSESTEAVLNLVCTACGKPCRSKTETDLHTKRTGHSEFTDKTEEAAKPIDLEAKSEPLPSSSEPVAGEDIVVSEGMEMVVPDVNKELLAELEAMGFPTARATRALHFTGNDNIEAAVNWVVENENDPEIDHMPMVPAQAKAEPAKATLSSEEIKAKTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEAKRIEEDNERKRILALXXXXXXXXXXXXXXXXQRIEEDKAERRRKLGLPAEDPNKVKTPPPAAEETKISLPVRPATKAEQMRNCLRSLKQSHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNPSFQERVGSLNGGVQFLELCGFVKDESAEILFLPRDKVDMPILNSAGAELNSAIVNPFFGVL
B9IJJ3_______________MAGLSLKCGDCGASLRSVQEAQDHAELTSHSNFSESTEAVLNLVCATCDKPCRSKTESDLHTKRTGHSEFTDKTAEAAEPISLEVPKATPMDANEPAADAS-TSTQPEEMVAPEVDKKILEELEAMGFPTARATRALHYSGNAGLEAAVNWVVEHENDPDIDEMPMVPVNSNAEASKPSLTPEEVKQKAQELRERARKKKEEEEMIAEREREKERIRIGKELLEAKRIEEENERKRLMALRKAEKEEEKRAREKIRQKLEEDKAERRRKLGLPPEDPATVKPSAPVVEEKKSMLPVRPATKQEQMRECLRSLKQNHKDDDAKVKRAFQTLLTYVGNVAKNPGEEKFRKIRLNNQTFQDRVGSLEGGIRFLELCGFEKIESDEFFFLARDKVDMAVLNSAGSELTSAINNPFFGVL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
365	80	20			0.995493
421	95		4		0.995482
422	95	4			0.995482
860	83		16		0.994512
1140	87		12		0.992554
1212		11		88	0.923564
1413	88	11			0.999952
1414			11	88	0.999952
1421	88			11	0.999952
1423	88		11		0.999952
1427	88	11			0.999952
1429		11		88	0.999952
1430		87		12	0.999964
1432	12	87			0.999964

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain