SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14879

Length: 1320 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14879

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein L19 n=4 Tax=Embryophyta RepID=A9NU99_PICSI	-	-	83%
FL-Next	sp=Ribosomal protein L19; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	60s ribosomal protein	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	98%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	98%
Blast2go	ribosome	GO:0005840	Cellular Component	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1I1

Fln msg:

Fln protein: MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPTEAPTAPAQQAAGGAKKK*

Protein Length: 205

Fln nts: AAGCACGTCGTGACCTTGGCTGTCACTGTATCTTAGGTAGGGGAGTGGACTATTATCGAACCCTTAAACCCCAAAACTCACAGAACAGAGGAATTTGCGAGGGAGACGAAGGTCCAGGAACA_-_ATGGTTTCGCTGAAGCTTCAGAAGCGGCTAGCGGCGAGCGTTCTGAAATGCGGGAAGGGAAAAGTCTGGCTCGACCCCAATGAAGTCAGCGAGATTTCCATGGCCAATTCCAGGCAAAACATTCGGAAGTTGGTCAAAGATGGATTTGTTATTCGGAAGCCAATGAAAATTCACTCTCGTGCTCGTGCTCGCCGTGCTTTGGAAGCAAAAAGAAAGGGTCGTCATTCTGGATATGGTAAGCGCAAAGGTACTAGAGAGGCTAGGTTGCCTACAAAGGTTCTATGGATGAGACGGATGAGGGTTTTGCGTCGATTGTTACGTAAGTACAGAGAATCTAAGAAAATTGACAAACACATGTATCATGATATGTACATGAAAGTCAAGGGTAATGTGTTCAAAAATAAGCGTGTCTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAAGCCAGAGAGAAGACCTTATCTGATCAATTTGAGGCAAAACGTGCAAAGAACAAGGCAAGTCGTGAAAGGAAGATTGCTAGGAGGGAAGAAAGATTGGCCCAGGGACCGACTGAGGCACCGACAGCACCTGCACAACAGGCTGCAGGGGGAGCAAAGAAGAAATGA___CGTGTCTGCTGTAGAACTTAGTTTTGCTAGAGTTTTTCCAGGCCTTGCTGAGCTTTCTAAGAGTTACTTCAGAAGTGGAGAAGAATAGAGAAACCAAAACTGTTGATTTTTTAATTGTAGAGTAGCGCAGCCTTGTAGCAATTTTGATTTTAATGGGATCTCGATGTGTTATTATGTTGGACTGATTGGATGCATGTGATGATATTTATTTACTTTGCCATGACAAGAGCTAATTTCTGGTTAAATTGCGCGTTATCTACCCTTGCAAATATCGTCTTGGATTAAAGCAGAATTCTTTACTTGTCATCTTCATCTTTGTAGAACATATTGCAGTGCTCTCTGAAGTTTGAAAATTTCATATAATATTAGAGATTAGCAAAAATTTGTAACTTCTGTGTTAAATGCTCAAGTAGAAAAGATACAAGCCATGAGAATTTCTTGATTTGAAAGGCTTTGAGGGATTATACTGAAGTTGAACTGCTCGTTTGTAAGGTATAACTTTAGCTAGATTGAAACTCACAGAAATTATCTGAAAATTTGAACTTCATTGGCTGTGCAGTTTTAGAGAAACAGAATGTGTAAATGG

Fln Alignment:

sp_v1.1_unigene14879___MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSXXXXXXXXXXXXXXXHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL
A9P1I1_______________MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
175		83		16	0.996397
429		2		97	0.972772
606	2	97			0.999471
653		9	90		0.992837
812	90	10			0.90298
815		10	90		0.90298
817	90			10	0.90298
821		10	90		0.90298
822	90	10			0.90298
823	90			10	0.90298
825	90		10		0.90298
827	90	10			0.90298
829	90			10	0.90298
830	90	10			0.90298
833		90		10	0.90298
834	90	10			0.90298
864		20		80	0.999996
878	89	10			0.999919
879	89		10		0.999919
881		11		88	0.999937
882			11	88	0.999937
886		11		88	0.999937
889			11	88	0.999937
890	88		11		0.999937
891	88	11			0.999937
894			88	11	0.999937
895		11	88		0.999937
980		11		88	0.999937
1080	14		85		0.993533
1224	33		66		0.997452
1230	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain