SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14872

Length: 907 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14872

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P1, putative; K02942 large subunit ribosomal protein LP1	-	-	3.0e-19	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	60s acidic ribosomal protein p1	-	-	4.99512e-24	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational elongation	GO:0006414	Biological Process	4.99512e-24	83%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	4.99512e-24	83%
Blast2go	ribosome	GO:0005840	Cellular Component	4.99512e-24	83%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	T %	Probability
742		2	97	0.964186
798		25	74	1.0
801	14	85		0.999981
802	14		85	0.999981
803	14	85		0.999981
804	14		85	0.999981
839		87	12	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
462	478	TGG TGG TGG TGG TGG TG	17
482	497	CTG CTG CTG CTG CTG C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain