SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14868

Length: 1452 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14868

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S2, putative n=2 Tax=Ricinus communis RepID=B9RIB2_RICCO	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	RNA binding	GO:0003723	Molecular Function	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMF2

Fln msg:

Fln protein: MAERGGRGGDRGGGFGRGFGRGRGDRGRGDRRGGRRGARRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALVLEDVEKEVLL*

Protein Length: 279

Fln nts: CGTCGTGTTCTTGGCTGTTTCGGGGGCTTTATGCTATTTATTCTGCCAGGGTTAAGTGTTCCAAGGGTTTTCTGCTAGGGCCGAGGGTTTCTAGGGTTTTACAGATTTATCAGA_-_ATGGCGGAAAGGGGAGGACGCGGAGGGGACAGGGGAGGTGGATTCGGACGCGGATTTGGCCGAGGCCGAGGTGACAGAGGTCGCGGGGACCGTCGCGGCGGCCGGCGAGGAGCCCGAAGAGACGAAGAAGAAAAATGGGTGCCCGTGACGAAGCTTGGCCGCCTGGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTCTCGTTGGCTGTGAAGGAGCACCAGATTGTGGAGGCCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAGATCATGCCTGTGCAGAAGCAGACGAGGGCCGGGCAGAGGACTCGATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACGTAGGGCTTGGGGTCAAGTGCAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGTTACTGGGGTAACAAGATCGGGAAGCCGCATACTGTGCCTGTTAAGGTCACAGGGAAGTGTGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGCGCGTGTGCCTAAGAAGGTTCTGCAGTTTGCTGGGATTGAAGATGTGTTCACCTCCTCTCGAGGGTCCACCAAGACGTTAGGAAATTTCGTGAAGGCAACCTTTGAGTGTCTCTTAAAGACTTACGGATTTTTGACACCTGATCTGTGGAGGGAGACCCGGTTCTCGAAATCTCCTTTCCAGGAATACACTGATTTACTGGCTAAGCCTGCTAAGGCCCTCGTCCTTGAAGATGTTGAGAAGGAGGTTTTACTATAA___ATTCCTTGTATTTTGATGAGGCGAGACTTTGTTTTCAAGTAAGATGTGACATCTTAAATTGAGAGTGACAACTTAGGCCGGTACAGAATTACAGCACTCTTTATATATGTTTTCTTCACTGTTGGTTTTAGTCAATTTTGTAGAGATGCGATGGATCTGGTACAATATATTCGATTTTCAGTTATCATTGACACTTTTAAAACTTCACCCAGCTATTTTTTGGAGTTCTGATGCATATTTTTATACATTATCTTGGGGGCACAGGTCAATGTTGTTTAAGTACAATTTAATTCACACTTCAATGTTATGAAGTGCATTTTATTTAAGTGCGTGCTTTGATAATTCATTCTTGGTGGCCACACTTTTTATTTGTGCAGTTGTTGTGATATATCGTATATCAATGTTATGTCAATAATTGTGCTTGTGGTTAATGGAAATTCTCATTACCCCCAAGTGGTGGCGCATAAGTTACCCTTCGCAGTGAGTGACAGGCCACTGAACTGC

Fln Alignment:

sp_v1.1_unigene14868___EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKA
A9NMF2_______________EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
980		4		84	1.0
1053	11		88		0.923564
1135	20		80		0.995493
1272		7		92	0.999532
1291	12			87	0.999964
1292	6	18	6	68	1.0
1295	18	9	9	63	0.999997
1296	22			77	0.999999
1297	22	77			0.999999
1298	12			87	0.992554
1299	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain