SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14866

Length: 1848 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14866

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L3, putative; K02925 large subunit ribosomal protein L3e	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ribosomal protein l3	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	ribosome	GO:0005840	Cellular Component	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg:

Fln protein: MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA*

Protein Length: 391

Fln nts: ATGGGAGAGTATATGGGGGACTACTAACCATTTACTCTGCTAAAGAGAAAAGGGTATTTGGGCTCTAGGGTTTTTGGGTTGGTCTTAGGGTTTGTGTCAACATTAGGGTTTGGGTGAGTGGATAGGCTATTCAGGGCTCCCGACTAATAGTCGGGTGTTAGGGACTTTGGGGGAAGACAGGAGGAAGCAGGAGGGGGAGTTGCAGCTGAAGAG_-_ATGAGTCACAGGAAGTTCGAGCATCCCAGGCATGGCTCTCTGGGATTTCTCCCTCGCAAGAGGGCACGTAGACATAGGGGCAAAGTGAAGTCATTCCCTAGGGATGATCCATCGAAGCCCTGCAAGCTGACGGCCTTTTTGGGCTACAAGGCCGGCATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGGAAACATGCGAGGCTGTGACGTTAATCGAGACCCCGCCAATGGTGATCGTGGGCGTTGTCGCTTATATCAAGACACCCAGAGGGCTTCGGACCCTTAACACAGTGTGGGCTCAGCACCTCAGCGAGGAGGTGCGGAGGCGGTTTTACAAAAACTGGTACAGGGCCAAGAAGAAGGCTTTCACTAAATACGCCAAGAAGTATGATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGAAGGCACACCTGATGGAAATACAAGTTAATGGGGGAACAATTGCGCAGAAAGTAGATTATGCGTATAACTTCTTTGAGAAACAAGTTCCTATTGATGCTCTTTTCCAAAAAGATGAAATGATTGATGTTATTGGTGTCACAAAGGGTAAGGGCTATGAAGGTGTGGTAACCAGGTGGGGTGTTACAAGACTGCCCCGAAAAACTCACAGGGGTTTGCGTAAGGTAGCTTGTATTGGTGCTTGGCATCCAGCTAGGGTTTCCTTTACTGTTGCCAGGGCTGGTCAGAATGGTTACCATCATCGTACTGAGATGAATAAGAAGATCTACAAGATTGGCAAGTCCGATCAGGAATCCCACAAGGCAATGACTGAATTCGATAGGACTGAGAAGGATATAACACCAATGGGTGGTTTCCCTCATTATGGTGTGGTAAAAGATGATTACATTATGATCAGAGGATGTTGTATGGGCACTAAGAAGCGGGTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCTTTGGAGGAAATCAAGTTGAAGTTCATTGACACATCCTCTAAGTTTGGACATGGGCGATTCCAGACAACCCAGGAAAAGGCCAAGATTTTTGGTAAATTGAAGGCTTAG___GTAATTAATACTAGTTGTGGATGTTTCATTCATGCCTGCATATAGACTTTTTGCAGGTGAGGTTAACTTCAAGGATTAATTTTGAATGTTGATTTGCAATCCTTTGTTATGTATTGGATTTTTCAGATAATTTTATTGAGCACTGATTTTTGCGAGGCAACTTTCAGTATTCATTATTGGGAGCACATAATTTTAGCTGTTTTTTAAGTGTTAAGAGTAGCTGCATAAAAACAGCCATTTATTTAATTGCTAGGTTAAAAGAGACAATGTTGTCTGCCTTCTTGAAAATGGATTACTGTGTTCTGTGCTCATTATGATGTCTTCTTATGTTGTGTTGGAAGGCAAATATCCATTTTCATGACTTTCTGCTCTCAAGATTGGCTGACTGATGGTGAAGTGGTTGCTATGAATATGAAGATTTATGTGTATGCTAGGGCCTTTTGTTTTTTGTATGCGACTTCTATA

Fln Alignment:

sp_v1.1_unigene14866___MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWXXXXXXXXXXXXXXXDSEDGKKEIQAELEKMKKYATVIRVLAHTQIXXXXXXXXXXAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA
A9NZI7_______________MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1025		25		75	0.996473
1071			14	85	0.993533
1072	85		14		0.993533
1073		85	14		0.993533
1325	97		2		0.977151
1526		97		2	0.966038
1538	3	96			0.982166
1541	3		96		0.986325
1542	3	1	94		0.924724
1547	1		3	94	0.960243
1548	3			96	0.993591
1549	3			96	0.993591
1560		4		95	0.996599
1566			95	4	0.997494
1649	87		12		0.999964
1712	54			45	1.0
1753	12		87		0.992554
1754		87	12		0.992554
1755	12			87	0.992554
1760	87	12			0.992554
1812		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain