SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14854

Length: 1329 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14854

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5A9Q7_PICSI	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein deubiquitination	GO:0016579	Biological Process	83%
Blast2go	cell proliferation	GO:0008283	Biological Process	83%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	83%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	83%
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	83%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	83%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Q7

Fln msg:

Fln protein: MEVRGAPGNQTNTPIMSNTKQTQSVSKTMDSRAVSRRLQSELMALMMSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESPLNSHAAAIWNNQEEFKKAVQKQYKEAGGITGQ*

Protein Length: 184

Fln nts: CGTCGTGACCTTGGTGTCATGGGGAGAGATGCTCGTTTTTCATCCTCTGCTTGCCTGGTACTTGCTTTCTTTGGAGCAAGGCCCTGGGACCGCGCGTTGATTAAGACGTTTCGCTATCTTCTTCTCTACAGATCTCTCAGCAATTCATTTTCATCTGCAGGTCTCTCTGCAATTCATTTTCGTCCGCAGATCTCTCTGCAATTCATTTTCGTCCGCAGATCTCTCGGCAATTCGTTTTCGCTGGTGCTCTTGCTTTGCCATTGGAGTTTAATTTTATATTTCTCTGATCTGCGGAACTC_-_ATGGAGGTCAGGGGTGCCCCAGGAAACCAGACCAACACGCCTATAATGTCAAATACTAAGCAGACTCAATCTGTATCGAAAACTATGGATAGCCGTGCTGTATCTCGAAGGTTGCAGTCCGAGCTGATGGCATTGATGATGAGTGGTGATCCTGGAATTTCAGCTTTCCCAGAGTCAGATAACATGTTCTCTTGGGTTGGCACGATAAATGGTGGAAAAGATACTGTTTACGAAGGTCTGTCATATAAGCTTTCTTTGCGTTTCCCAGTGGATTATCCCTTCAAGCCTCCACAAGTGAAGTTTGAGACAGCTTGCTTCCATCCTAATGTTGATCAGTATGGAAACATCTGCTTAGACATTCTTCAGGATAAATGGTCCTCTGCATATGAGGTTCGAACTGTTCTGCTGTCTATTCAGAGTCTTTTGGGAGAACCAAATAATGAATCTCCTCTTAATAGCCATGCGGCAGCAATATGGAACAATCAGGAAGAATTTAAAAAGGCGGTGCAGAAGCAGTACAAGGAAGCGGGTGGAATAACTGGTCAATAA___TTTCAATTCATACCATTTTCAAGCCTAAGATTCTTTGCATTTGGTGCAATCAAATTGTGCTAGGTGCTAGTTCTACATTTTTTTCTTGTATAAGATGGTGTCTAGAAAATCATACTATTCATACTATTGCCAATACATCTGGAAAATGTCGAGGAAATCCTGTAAAAGAATCATATGCAATTCCTCAGGTTAGAGGGTGCTCGGGCTGTATTCACTTGAGTAATTTAACACGAAGGAAAGATATTTAAACGGTTAGGTCAAGAACATATCCGATGATTGATGGTGGCATGTTGGCATGTTGACAGATGATTGGCAACTCCTGTTGTCATGACTTGTTAGTCAAGAACATATTATCTAATGAATGATTGTGTCTGTTTTTTATAATTGTATATGATTCTATTTTGTTATGGTGTGTTGGACAAGATTGGCAATTTGTGTTTGACAATTATTTAATATTATTGGCAACCTGTGTTTAAAAATG

Fln Alignment:

sp_v1.1_unigene14854___MEVRGAPGNQTNTPIMSNTKQTQSVSKTMDSRAVSRRLQSELMALMMSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESPLNSHAAAIWNNQEEFKKAVQKQYKEAGGITGQ
D5A9Q7_______________MEVRGAPGNQTNTPIMSNTKQTQSLSKTMDSRAVSRRLQSELMALMMSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESPLNSHAAAIWNNQEEFKKAVQKQYKDAGGVTGQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
801	75		25		0.996473
802	75		25		0.996473
839	92	1	5		0.99999
1227	20		6	6	1.0
1228	21	7		7	1.0
1235	10			90	0.90298
1238	85		14		0.993533
1240		12		87	0.992554
1241	12			87	0.992554
1243			12	87	0.992554
1244	87	12			0.992554
1245		12		87	0.992554
1252		83		16	0.994512
1318	25		75		0.996473
1322	25	75			0.996473
1323	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain