SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14848

Length: 1237 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14848

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative tonoplast intrinsic protein n=1 Tax=Camellia sinensis RepID=D3GDK8_CAMSI	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mip tip subfamily	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	water channel activity	GO:0015250	Molecular Function	77%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	77%
Blast2go	central vacuole	GO:0042807	Cellular Component	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	77%
Blast2go	Aquaporin	IPR012269	-	77%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	77%
Blast2go	Aquaporin-like	IPR023271	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ31

Fln msg:

Fln protein: MAKIALGNRDEPARPDCVRAVFVELICTFLFVFAGVGSAMAMDQMSVPANSPAGLTVVALTHAFVVFAMISAGFSISGGHLNPAVTLGLAVGGHISLIRSLLYWIAQLLASVLACFLLKFLTGGSATPVHTLSSGMTYFQGVIMEIVLTFSLLFTVYATAVDPKKGNVGITAPLCVGLVVGANIFAGGPFSGASMNPARSFGPALVTGIWKDHWVYWVGPLVGGGLAGFVYENIFIYETHTPLPDVEY*

Protein Length: 250

Fln nts: ATGGGAAGTTGGGGTATCCTCGGAGTGTATGGGGGCACTGCATAAAGTTAGGCTTTTCAGAGCTGGGCATAATTGGTGACCAGGCAGCTAACTAAG_-_ATGGCTAAGATTGCCCTGGGGAATCGAGATGAGCCCGCTCGTCCGGACTGTGTGAGGGCAGTATTTGTAGAACTTATATGCACTTTCCTTTTTGTGTTTGCAGGAGTTGGATCTGCTATGGCCATGGATCAAATGTCTGTTCCTGCTAATTCCCCGGCTGGGTTAACTGTGGTTGCCTTAACTCATGCTTTCGTGGTTTTTGCGATGATCTCTGCTGGATTCAGCATCTCGGGAGGACACCTAAACCCTGCGGTCACATTGGGTTTAGCAGTCGGGGGGCACATCTCCCTTATTAGATCTCTTCTCTACTGGATTGCACAGCTGTTGGCTTCTGTACTTGCCTGCTTCCTCCTCAAGTTCCTCACTGGAGGCTCAGCAACTCCTGTGCATACGTTGTCATCGGGCATGACTTATTTTCAGGGAGTGATCATGGAGATTGTTCTCACGTTTTCGTTACTGTTCACTGTGTATGCAACGGCTGTGGATCCGAAGAAAGGAAACGTGGGGATCACAGCGCCATTGTGTGTTGGGTTGGTGGTTGGAGCGAACATCTTTGCAGGCGGGCCGTTCTCGGGTGCTTCCATGAATCCTGCTCGCTCCTTTGGACCGGCACTGGTCACCGGGATTTGGAAAGACCACTGGGTGTATTGGGTCGGTCCTCTGGTCGGCGGCGGTCTCGCTGGCTTTGTCTATGAGAATATCTTCATCTATGAAACACACACCCCGCTCCCTGATGTGGAATACTGA___GAAAGAAAAAGTTGATTGCGTGGGCTGACACCATGAAAATTCAGTCGTCTAGATAGTTCTCCACTGTTCTACTTCTGTAAATACTCCGGTCATGTGTAACCTGGTGTGACACAACTATGTAGGGATGTAAGTAAATATGCTATGTTTAGTTTTTTCTATTTGGAAATATGATATGGTCTGGTCAGGGTTGGTGCCACCAATCGATTGGCTTTGATCGAGTTGGTACCACCAACGGGGCTGAATGTATAAAAGCTGTTAATGTACTTTTAGTCTTTGCAGTAGAGTTTACTGTGATCACAGTGTTGGAATTTCATCCTCCTATTTGATGATTTTGATAATTCTAATATTGGTTTGGACAGTTTTATGTGATCACAGTGTTGGAATTTCATCCTCC

Fln Alignment:

sp_v1.1_unigene14848___MAKIALGNRDEPARPDCVRAVFVELICTFLFVFAGVGSAMAMDQMSVPANSPAGLTVVALTHAFVVFAMISAGFSISGGHLNPAVTLGLAVGGHISLIRSLLYWIAQLLASVLACFLLKFLTGGSATPVHTLSSGMTYFQGVIMEIVLTFSLLFTVYATAVDPKKGNVGITAPLCVGLVVGANIFAGGPFSGASMNPARSFGPALVTGIWKDHWVYWVGPLVGGGLAGFVYENIFIYETHTPLPDVEY
B8LQ31_______________MAKIALGDRDEAARPDCVRAVFAELICTFLFVFAGVGSAMAMEQMSVPAKSPAGLTVVALAHAFAVFAMISAGFNISGGHLNPAVTLGLAVGGHITLIRSLLYWIAQLLASVLACFLLNFLTGGLATPVHTLSSGMTYFQGVIMEIVLTFSLLFTVYATAVDPKKGSVGITAPLCVGLVVGANILAGGPFSGASMNPARSFGPALVTGIWKDHWVYWVGPLVGGGLAGFLYENIFIYETHTPLPDVEF

SNPs (tot: 5)

Position	A %	C %	T %	Probability
834		2	98	0.900134
1092	91		2	0.99441
1108		87	12	1.0
1122	85	14		1.0
1159		93	6	0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain