SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14839

Length: 1739 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14839 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	96%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	chalcone synthase	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Naringenin-chalcone synthase.	EC:2.3.1.74	-	0.0	98%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	98%
Blast2go	Biosynthesis of phenylpropanoids	01061	98%
Blast2go	Metabolic pathways	01100	98%
Blast2go	Biosynthesis of secondary metabolites	01110	98%

Source	GOs	Term	Type	Identity
Blast2go	flavonoid biosynthetic process	GO:0009813	Biological Process	98%
Blast2go	acyltransferase activity	GO:0008415	Molecular Function	98%
Blast2go	naringenin-chalcone synthase activity	GO:0016210	Molecular Function	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A8E1V8

Fln msg:

Fln protein: MAGGMMADLEAFRKAQRADGPANILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFEMLWTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ*

Protein Length: 397

Fln nts: TGAGCCTTCCTGAAAGCCTCCAAATCCGCCATCATTCTCCAGCCATAATGATTTTAGGACTCTCGCTGCTCACTACTCGTCAGCCACACAATTCAGCCTTAAAATTCTCCACTCAGCTCCTCTTCTGCTCGGAGACTCCACGCTCCAGTCTCCACTGCAGTTCAGGAATTCATTCGTTGAATTTAGGGCTGAGTTGTGTGGCCGACGAGTGGTGAGCAGCGAGGGTCCTAAAATCATT_-_ATGGCTGGAGGAATGATGGCGGATTTGGAGGCTTTCAGGAAGGCTCAGAGGGCAGATGGCCCAGCCAACATCCTCGCTATAGGTACTGCTACTCCTCCCAATGCGGTCGATCAGAGTACTTATCCGGATTACTACTTCAAAATCACCAACAGCGAGCATATGACAGAGCTCAAGGAGAAATTTAGAAGAATGTGTGACAAATCCGCAATAAAAAAGAGATATATGTACTTGACAGAGGAGATCCTCCAGGAAAATCCCAGCGTATGTGCATACATGGCGCCATCGCTGGACGCACGGCAGGACATGGTTGTGGTGGAAGTGCCCAGGCTTGGAAAAGAAGCGGCCGCCAAGGCCATCAAGGAGTGGGGGCAGCCCAAATCTAAGATCACTCATGTCATTTTCTGCACAACCAGTGGAGTGGACATGCCCGGAGCTGATTATCAGCTGACAAAGCTTCTCGGCCTCCGCCCCAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTTGCTGGAGGCACCGTTCTCCGCGTGGCTAAAGATCTGGCAGAGAACAATCGGGGCGCTCGGGTCCTGGTCGTTTGCAGTGAAATCACGGCTGTTACATTCCGTGGCCCCTCCGACACTCACCTCGACAGCATGGTCGGCCAAGCTCTCTTTGGGGACGGTGCGGCTGCCCTCATCGTGGGAGCCGATCCGGTCCCTGAAGTGGAGAAGCCCTGTTTCGAGATGCTGTGGACCTCACAGACAATTCTTCCCGACAGCGACGGAGCCATCGATGGACACCTGAGAGAGGTAGGCCTCACCTTTCACCTTCTCAAAGACGTTCCAGGCCTTATTTCCAAGAACATAGAAAAGAGTTTGGTTGAGGCATTCCAGCAATTCGGAATCTCGGACTGGAACCAGTTATTCTGGATCGCCCATCCAGGAGGTCCTGCTATTCTGGATCAAGTGGAGGCCAAGCTGAATCTGGATCCCAAGAAACTGAGGGCCACCAGGCAAGTACTGAGCGATTATGGAAACATGTCGAGCGCCTGCGTGCACTTCATCTTGGACGAGATGAGGAAGTCATCTCATCAAAACGGATGTTCGACAACCGGAGAGGGATTGGATGTGGGAGTTCTGTTTGGATTCGGGCCGGGCCTCACTGTAGAAACAGTCGTCCTCAAGAGCGTTCCCCTGCAGTAA___TTGAACAACAATAGTCTCAAAAATAAATCTTGTTACTCGTTACGGTAAATATTTGGTTTTGGTTGTGTAAGCTTCGCAGGAATCAGAGTGAAATTAACCCGAATAATTGATTATTGGTTCTTGCTTGGCGGGGTATTATGTAAACGACCGCAGTCATATCATTAGAATTTTCATATGGTATATACTATTCCAAGCTTTTCTTAATAACACTGTTATGTTATTCGAGTTCATCGTGGACAAAGCTTTTCAATTGTTGGTGTTTATATGGTTGGTTATAGAGCTCTGATTTCTACAGTAATGATATCAATTTATC

Fln Alignment:

sp_v1.1_unigene14839___MAGGMMADLEAFRKAQRADGPANILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFEMLWTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ
A8E1V8_______________MAGGMMADLEAFRKAQRADGPANILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFEMLWTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPLQ

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
589	75			25	0.996473
649		75	25		0.996473
745	16		83		0.994512
746	85			14	0.993533
854	12		87		0.992554
1023		10		90	0.90298
1024		10		90	0.90298
1026	90			10	0.90298
1083	85		14		0.993533
1156		83		16	0.994512
1610		1	93		0.999943
1611	35	3		59	1.0
1612		4	93		0.999943
1615			96	3	0.988939
1623	6		93		0.999153
1624		93		6	0.999153
1626		6	93		0.999153
1628	3		90	6	0.997073
1630		6	93		0.999264
1632	93			6	0.999264
1633			93	6	0.999264
1634	93		6		0.999264
1636	6		3	90	0.997544

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain