SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14837

Length: 1415 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14837

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic n=4 Tax=Spermatophyta RepID=G3PC_GINBI	-	-	91%
FL-Next	sp=Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	glyceraldehyde 3-phosphate dehydrogenase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).	EC:1.2.1.12	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	94%
Blast2go	Biosynthesis of phenylpropanoids	01061	94%
Blast2go	Biosynthesis of terpenoids and steroids	01062	94%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	94%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	94%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	94%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	94%
Blast2go	Biosynthesis of plant hormones	01070	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	94%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	94%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	94%
Blast2go	glycolysis	GO:0006096	Biological Process	94%
Blast2go	gluconeogenesis	GO:0006094	Biological Process	94%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	94%
Blast2go	copper ion binding	GO:0005507	Molecular Function	94%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	94%
Blast2go	NAD binding	GO:0051287	Molecular Function	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%
Blast2go	cell wall	GO:0005618	Cellular Component	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: P34924

Fln msg:

Fln protein: MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMTYMFKYDSVHGKWKHHEVKVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDLNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVAWYDNEWGYSSRVVDLIVHMAATQ*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATAGTACATCTGCACTTCTCCTCTATCTTGTTTCTTGAAAAATATTTCAGCTCGCAAGCTTTGTATCTTACA_-_ATGGGTTCTACTGGAAAGATCAAGATTGGAATCAACGGTTTTGGTCGAATTGGAAGGCTCGTCGCCCGTGTGGCTCTGACTCGCGATGATATCGAGCTCGTGGGGGTAAATGATCCGTTCATTTCCACCGATTATATGACTTACATGTTCAAATATGACAGTGTCCACGGCAAATGGAAGCATCATGAAGTGAAAGTCAAAGACTCGAAAACTTTACTATTTGGAGAAAAATCCGTGGCCGTTTTCGGTTGCAGAAATCCTGAGGAAATACCATGGGGCGAGGTTGGCGCAGAGTATGTGGTTGAATCCACTGGTGTCTTCACCGACAAAGAGAAAGCATCTGCCCACTTGAAGGCAGGTGCTAAAAAGGTAGTTATCTCGGCTCCCAGCAAGGATGCCCCCATGTTCGTTGTTGGGGTTAATGAGCACCAATACAAATCTGATTTGAACATCGTTTCAAATGCAAGCTGTACTACTAACTGCTTGGCCCCTTTGGCTAAGGTGATCAATGACAAGTTTGGCATTGTTGAAGGTCTTATGACAACCGTGCATTCCATCACAGCAACTCAGAAGACGGTTGATGGACCGTCAAACAAGGACTGGCGAGGTGGCAGAGGAGCTGGTTTCAACATTATCCCTAGCAGTACAGGAGCAGCTAAGGCTGTTGGCAAGGTTTTACCAGCCCTCAATGGAAAGTTGACTGGAATGGCCTTCCGAGTACCCACACCAGATGTTTCAGTTGTTGATTTGACTGTTAGACTTGAGAAGTCTGCTACTTATGATGAGATTAAGGCGGCCATCAAGGCGGAATCTGAAGGAAATTTGAAAGGAATTCTTGGTTACACAGAAGACGCTGTGGTATCTACAGATTTCATTGGGGACAGTCGATCAAGCATATTTGATGCGCAGGCAGGGATAGCTCTGAGTGACAACTTTGTGAAATTAGTAGCATGGTATGACAACGAGTGGGGTTACAGTTCCCGAGTGGTAGATCTGATTGTACATATGGCCGCTACACAATAA___GTTATGATAGTACTACATAGTCCATGTCTTGGACTCTCTTCTTTAGATAGATTTTATGAAGTTTAGTGATTCTGGTTCTTAGAGGATTATCTTCATTTGAATAAAAATAAAGAACTTGCAAAAATTATATCATTGCATGTAAAGAAACGCATGCCTTCCATGACGGTCAGTGCATGGATAAGAATGTGTTTTAAATTTTTGGGAAATAAAATTGAGGATATATGAATGGCTTTCTCTTATTTGTTGTGTGGTTCACGTAAATGAGAAAAAATGGTTAGTTTTGTTTGTTCGCA

Fln Alignment:

sp_v1.1_unigene14837___MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMTYMFKYDSVHGKWKHHEVKVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDLNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVAWYDNEWGYSSRVVDLIVHMAATQ
P34924_______________MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1360	5	11		83	0.999887
1362	16	8	8	66	0.999991
1363	20			80	0.999996
1364			10	70	0.999998
1365	11		88		0.923564
1366	11			88	0.923564
1367	11			88	0.923564
1387	33		33		0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain