SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14835

Length: 1579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14835

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Porin n=4 Tax=Picea RepID=O24244_PICAB	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	probable plasma membrane intrinsic protein 1c	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	93%
Blast2go	water transport	GO:0006833	Biological Process	93%
Blast2go	transmembrane transport	GO:0055085	Biological Process	93%
Blast2go	water channel activity	GO:0015250	Molecular Function	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	93%
Blast2go	Aquaporin	IPR012269	-	93%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	93%
Blast2go	Aquaporin-like	IPR023271	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ4

Fln msg:

Fln protein: MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRADNVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMEGEYQADGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKSHVWDDHWIFWVGPFLGAGLAAIYHQMIIRAIPFKTRS*

Protein Length: 290

Fln nts: AAGCAGGTGGTATCAACGTCGTGTACATGGGGAGGGACACACATTCATTCATTCTGCATTTGCTGCTCTGCACAATTTTGGCTTTGTTTCGACTGAGTTCAGACAGTCTCAGAATCCTCTGGTTCTCTGTGTTGAA_-_ATGGAAGGAAAAGAAGAAGACGTTAAGCTCGGGGCGAACAAGTATTCCGAGAGGCAGCCGCTGGGGACTGCGGCACAGACGAGGGAAAAGGATTACAAGGAGCCTGGTCCCGCGCCACTGTTCGAACCCGGGGAGTTAGCGTCATGGTCCTTCTGGAGGGCGGGTATTGCAGAGTTCATGGCGACTTTCTTGTTTCTTTACATCACGATCCTCACGGTCATGGGTGTCAAGAGGGCCGACAATGTTTGCACTGGATCTGTTGGAATTCAGGGGATTGCATGGGCCTTTGGGGGAATGATCTTCTGTCTCGTCTATTGTACAGCCGGTATTTCAGGTGGTCACATTAATCCAGCAGTGACCTTTGGGCTGTTCTTGGCCAGAAAGCTGTCTCTGCCCCGGGCTGTGTTCTACATGATATGTCAGTGCTTGGGAGCCATCTGTGGCGCTGGTGTTGTGAAGGGCTTCATGGAAGGCGAATATCAAGCGGACGGTGGAGGTGCTAACTCTGTGGCTCATGGCTACACCAAGGGAGATGGCTTGGGTGCTGAGATTGTGGGAACCTTCGTTCTGGTCTATACCGTTTTCTCTGCTACCGATGCCAAGCGAAGCGCCCGGGATTCTCACGTTCCTCTGCTAGCACCACTTCCAATAGGGTTTGCAGTTTTTCTGGTTCACCTTGCCACAATTCCTATCACTGGAACTGGCATCAACCCTGCCCGAAGCTTGGGAGCTGCCATCATCTACAACAAGTCTCATGTTTGGGATGACCATTGGATTTTCTGGGTCGGTCCATTCTTGGGCGCTGGATTGGCAGCTATTTACCACCAGATGATCATTCGTGCCATTCCCTTCAAAACTCGCTCCTAG___AAACAGCCCAGCCTAGCCCAACATATTGGAGAGGGGGCTTAAATTTAAGGCTGAGAGGTCTGTTAACGCATGTGTATTGTCGTCTGATAAATGGTTTTACAGGATGGATGATATCCATATATTATGTTTTAAGTGTGATTTAGGCCAGTGGAAGCCACTGGCAGATTCTGCTCTGGTGGGCTTCGGTGGAGTGTATTATTCCTGTCACTGTAAAATAATGGACTCTTTGGTTGTTGCACTCAGTGGGTCTGTCTGTAAATTTCGTCATTATCTTCTTTTTTAATGGAAGTTATAGCCAGTGTGGTTGAATTATGTTGGACTCTATGATTTGATCTTATCTGATAAATAATGATGGTTCGCTGTATAACGACAAAGGATGAACCCAACCCCACGGTCTGAGCCGCACCTCATTTTATCGCCAGTGAACGGACTGCATTCAAGACGACGTACCAACCATAAGATAGGGCGAATATTATTTTTTATAAAGTTAAGAGTTATAGAGATAGTTGATCATTGATTTTGTGTTATGTGAATGACATTTTGCTCAAAATTAAGATTCTTCTGATACTATTAATT

Fln Alignment:

sp_v1.1_unigene14835___MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRADNVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMEGEYQADGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKSHVWDDHWIFWVGPFLGAGLAAIYHQMIIRAIPFKTRS
A9NNZ4_______________MEGKEEDVKLGANKYSERQPLGTAAQTREKDYKEPGPAPLFEPGELASWSFWRAGIAEFMATFLFLYITILTVMGVKRSDDVCTGSVGIQGIAWAFGGMIFCLVYCTAGISGGHINPAVTFGLFLARKLSLPRAVFYMICQCLGAICGAGVVKGFMESEYEMDGGGANSVAHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKSHAWDDHWIFWVGPFLGAGLAAIYHQMIIRAIPFKTRS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1218	96		0		0.996219
1239	3		96		1.0
1242	4	95			1.0
1243	3	1		95	0.999393
1244	2	97			0.944212
1316	15	5		79	1.0
1317	10	5	83		1.0
1318	14			85	1.0
1515		75	25		0.996473
1540		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
42	54	CATT CATT CATT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain