SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14823

Length: 1778 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14823

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] gb\|AAF87855.1\|AC073942_9 Contains similarity to a KIAA0420 protein from Homo sapiens gi\|2887415 and contains a CRAL/TRIO PF\|00650 domain [Arabidopsis t	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	sec14 cytosolic factor family protein phosphoglyceride transfer family protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	76%
Blast2go	transporter activity	GO:0005215	Molecular Function	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLP4

Fln msg:

Fln protein: MLSKKNGAKGQETRLSPAEEQAKINELRALLGPLTGKLLLFCSDASLARFLRARNWNMKKAAKMLKETLKWRLQYKPEEIRWEDVAHEAETGKIYRANYVDKYGRTVLVMRPGFQNTTSSKGQIKYLVYCMENAILNLPPDQEQMVWLIDFKGWSAGTISVKVTRETAHILQGCYPETLGLAILYNPPKIFESFFSVVKPFLEPKTYKKVKFVYSKDPESRKIMDEVFDMDKLECAFGGLNPIEFNVVDYGKRMKEDDNKMALHWSSAVSTLSSNNSPSFLDTNSFECGSDSSDKEVNLESLDIESDSDGFPKAGLQDSSCLDSEHDRPAEMNKNTGPVKLESGSNSSA*

Protein Length: 351

Fln nts: ATGGGGATGTTCACTAACCACTCTTGAAAGAGTTGAGCCATGGACCAATCAAGCAAGATACGCTGGACTTTCTCCACAACTTACACATGTTCACACTAATGTCAGATCTGACCGCCTCGACGGAAACTCCAATTTGCCAGCCAATCATAGACGAGATAACCGAAAAACTCTCCGATTGAAGTTTTCTGCATTTGTATGAAGGATAATTGATATCATGTGATAACCCTCTGGACTGCTGTTCCATATTTATGTACTGGGGAGTCCTTGCAGTGAAGGTGAGCAGCAGGAGTAGAGGATCCGTCTGCAGACGCGAATTTGGCAGGGCGATTTGGGTCACCCAGTATACAAGAGAACATCACAATC_-_ATGTTGTCAAAGAAAAATGGAGCTAAAGGCCAGGAAACACGTTTGTCTCCTGCAGAGGAGCAAGCTAAGATAAATGAGCTCCGGGCATTGCTAGGGCCATTAACAGGTAAACTGTTGTTGTTCTGTTCAGATGCTTCATTGGCTCGATTCCTGAGGGCACGGAATTGGAATATGAAAAAAGCGGCTAAGATGTTGAAAGAAACTCTCAAATGGAGATTGCAGTATAAACCAGAGGAAATACGATGGGAGGATGTAGCACATGAAGCAGAGACAGGAAAAATTTACAGGGCAAACTATGTTGACAAGTATGGAAGGACTGTACTTGTTATGAGACCAGGGTTCCAGAACACAACATCCTCCAAAGGGCAAATCAAGTACCTTGTATACTGTATGGAGAATGCCATTTTAAACTTGCCACCAGATCAAGAACAAATGGTTTGGCTGATTGATTTTAAAGGTTGGAGTGCAGGCACTATTTCAGTGAAAGTAACACGTGAAACAGCTCACATTTTACAGGGTTGTTATCCAGAAACATTGGGTTTAGCCATTCTGTACAATCCACCCAAGATATTCGAATCATTTTTTTCGGTGGTCAAACCATTCCTGGAACCGAAGACATACAAGAAAGTAAAATTTGTTTATTCAAAAGATCCAGAGAGTAGGAAGATCATGGATGAAGTATTTGACATGGATAAACTTGAATGTGCATTTGGTGGGCTAAATCCTATAGAGTTCAACGTAGTTGATTATGGCAAACGTATGAAGGAAGATGATAATAAGATGGCCTTGCATTGGAGTTCAGCTGTTTCCACGCTTTCTTCAAACAACTCTCCATCATTTTTGGATACAAATAGTTTTGAATGTGGTTCCGACAGCTCTGATAAAGAAGTAAATTTGGAATCACTTGATATTGAGTCTGATTCCGATGGTTTTCCAAAAGCTGGATTGCAGGATTCATCTTGCTTGGACTCTGAACATGACAGGCCTGCAGAGATGAACAAAAATACTGGTCCTGTTAAATTGGAGTCTGGTTCCAACAGTTCTGCTTGA___AAATTACATAATTTATTTTACTAACAACAAAACATCCTTACGGTCTAGTTACAATAGACTGTAAAATGCACAGATATGAGAGAGGGCATATGGCGGAAATGTAAATATTTATTTCTCTAAAACTTTATGTTAGTGATGGCTGCAATCTGACCACCATCAAGATAATGTTGACTTGTTTCAAACAAATTTTCACATCATTAAATTGCTATATGTCAAATACTTCTGTATTTCGGATATTAGAAGTTTGCTAGTGGTCCTAGCGGAGGTGAAGGGATTGCATTAGGTAATAAGCATGGCATGCTTACATGTATCGATCATTTTCATAGAAAGAATAAACCTTCAGATTATTCTCATTCTGCCAAAAA

Fln Alignment:

sp_v1.1_unigene14823___MLSKKNGAKGQETRLSPAEEQAKINEXXXXXXXXXXXXXXFCSDASLARFLRARNWNMKKAAKMLKETLKWRLQYKPEEIRWEDVAHEAETGKIYRANYVDKYGRTVLVMRPGFQNTTSSKGQIKYLVYCMENAILNLPPDQEQMVWLIDFKGWSAGTISVKVTRETAHILQGCYPETLGLAILYNPPKIFESFFSVVKPFLEPKTYKKVKFVYSKDPESRKIMDEVFDMDKLECAFGGLNPIEFNVVDYGKRMKEDDNKMALHW---XXXXXXXXXXXXXXFLDTNSFECGSDSSDKEVNLESLDIESDSDGFPKAGLQDSSCLDSEHDRPAEMNKNTGPVKLESGSNSSA
A9NLP4_______________MMSKKNGAKSQETPLSPAEEQAKINELRALLGPLTGKLLLYCSDASLARYLRARNWNMKKAAKMLKEALKWRLEYKPEEIRWEDVAHEAETGKIYRANYVDKYGRTVLVMRPGFQNTSSSKGQIKYLVYCMENAVLNLPPDQEQMVWLIDFKGWKAGAISVKVTRETARILQGCYPERLGLAILYNPPKIFESFFSVVKPFLEPKTYRKVKFVYSKDLESRRIMEEAFDMDKLECAFGGLNPIEFNVVDYGQRMKEDDNKMALHWNSSVSTLSSNNSAETKSFLDTNNFEVGSDSSDKDVNLESLDIESDSDGCPKAVLQDSSCLDSDPDTSAKMNKKDDPVKLESSSNSSA

SNPs (tot: 5)

Position	C %	T %	Probability
1608	25	75	0.996473
1610	85	14	0.993533
1693	7	92	0.999532
1769	14	85	0.993533
1778	66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain