SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14821

Length: 1856 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14821

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATRZ-1A; RNA binding / nucleotide binding	-	-	5.0e-35	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	cold acclimation	GO:0009631	Biological Process	72%
Blast2go	RNA binding	GO:0003723	Molecular Function	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	72%
Blast2go	Zinc finger, CCHC-type	IPR001878	-	72%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	72%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNN7

Fln msg:

Fln protein: MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGEDRGDRGDRGYGGGGGRGYSGGGGNSECFKCGQRGHFARECPNGDGYRGGGGDRYGSRSDRYGGGSRSSKYGSDRNGGGGDRYGGRSRDGGSRSGKDDRYNRDRSGPYDRPSGGGRSYDDRD*

Protein Length: 213

Fln nts: AAGCACGTCGTGACCTTGGCTGTCATCGGGATTTTCACATCATTTCATTTCATTTCATTTGAGAGAGGCGTAGGGTTAGAAGTGATCGAGGTTTTCATTGCGGAGTAGCCACAGAAGCCTGCTGGGCAAGCATTTGCAGGGCAAGTTTCTTCTGTAACAGCGGTGTTTCGAGATCGAATCTGAGTGCTAAAGCTGAGATTAGGGTTTCTGAAGAAATTTCAGCC_-_ATGTCGGACGCTCCGGAATATCGCTGCTTCGTTGGAGGCCTCTCGTGGAGCACATCTGACAGGACTTTGGAAGATGCTTTTCACAAGTTTGGTCATCTCATTGAGGCAAAGGTTGTCGTTGACAGGGATACTGGTCGTTCCCGAGGTTTTGGGTTTGTCACATTTGATGACAAGAAGTCCATGGAAGATGCCATAGATTCCATGCATGGGATGAGTCTTGATGGCCGTTCTATAACCGTTGACAGAGCTCGGCCAAAGAGTGATGGGGAAGATCGTGGTGATCGTGGTGACCGTGGCTATGGTGGTGGAGGTGGAAGAGGATATAGTGGTGGTGGCGGCAATTCAGAGTGCTTTAAATGTGGTCAACGTGGTCATTTTGCCAGGGAATGCCCTAATGGAGATGGATATCGTGGGGGTGGAGGTGATAGATATGGAAGCAGAAGTGATCGTTATGGAGGTGGTAGTAGGAGTAGTAAATATGGTTCTGATCGCAATGGTGGTGGTGGTGATCGGTATGGAGGACGCAGTCGGGACGGAGGAAGCCGTAGTGGTAAAGATGATCGCTACAATCGTGACCGTTCTGGTCCATATGACCGTCCAAGTGGTGGCGGGCGTTCTTATGATGATCGTGATTGA___GGAATGTGGTTGTTTTGGTGGCTGTGATGCCTCAGTAAAGAAATTTTGAAGCTGTGTTGAATATGAAAAGTGGTATAGGGATCACTGTGAAATTCACGTATCACTGGCCAAGTGTTTCTGTTGTCTATGACATTGTGTAATTGCTTTAGTAATTGTACACACTTGAATGCCAGGATTAGGCTGAACCTTGGGATATTTTATTTTCTATCGTTTCAAGATTCTTCTAAGTTGGAATGTTTGAGAGGCACTGTGCTACTTTCATTGTTTTACAGTAGTTTTTTAGATTCATTGGCTTTCTTGAGTTGGAATGTTATGGACAACGATGAGAAACTATGTTTTGAAGGTAATGGTCATGGCCTAGTGGAGTAAAGTTATTTCTGAATATTTGATATGATTCTTCAGCCTGAAGATGTGTTCTTACGAGGATGTGTGCTGAGCCTAGTGACAAGTTATCGAGGAAAAAATTTACAATTTAGTGGAAGCCCCTTAGTATTGAGAATGATTGCTTTCTATCAGCGGAATGGAGCTTTTACTACTCCTAAGGGACTGAATCAGGAATTTTCTGTAGTATTGCTATCTTGCTATCCTAAGGAAAGACTAAAAAGATATAACCTGCAAGAGTATAGATCTGGATGTGACACATTTAAATGCCGATAATTGGTCAGTGAGTATGAGCTACAAGATTCAGAAAATGGTAAAGTTTAGTTTTAGCGAAACATTTATATTGGTAGTTTATTTGATATGATTTGTGTATTTTTTTGGGTTTACCTAAATTTTCTTTTCAAGCTACTACTCAGTACTTCGAAGGTTAATTGTGCTGCTCTTGTGGCAGGCTGGGATATGGCCTTTGTTCTTGATGCTCTTTTCAAACTGTTTGGAACGTGTCTTACAACTTCACTTTCTTTATCTAAATTGCTCGAAGTTGTAACATGATATATTGATATTGCCCTTAGAATAATATGTTCTTGAGATTCTGGGTAAGTTGTCCAATATGGC

Fln Alignment:

sp_v1.1_unigene14821___MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDRARPK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXNSECFKCGQRGHFARECPN
A9NNN7_______________MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDRARPKSDGEDRGDRGDRGDRGYGGGSGRGYSGGGGGGSSECFKCGQRGHFARECPN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1123	2			91	0.995208
1694		87		12	0.992554
1721		28		71	1.0
1726	14			71	0.984337
1741		83		16	0.994512
1769		16		83	0.994512
1803	66		33		0.997452
1830		33	66		0.997452
1835	33	66			0.997452
1839		33	66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
40	60	TCATT TCATT TCATT TCATT T	21
719	732	TGG TGG TGG TGG TG	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain