SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14811

Length: 2403 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14811
CGTCGTGACCTTGGCTGTCACTCAGTCTCGTACATTCCTAAGGGCTCATTGGTAGCCCCATGTGACATTACTACACCTTTGAACGTCTCCAATACATGGGTGTAAGAAATGGATGGTCTTAGATGCTACTTTTCATGGAAGGCTGTTCGGAAGTCAGTATATCTTACTTTCTCTTGCTCTAATCACAGTTGTCCTTTTTGTTGGTTTGTTTTCATCTCGTTGCTAGGCAGCTAGGGTTTGCAGCCGAGCACATCAGGGCAATACATCCAAACACTACATCGCTCACAGCTGCAACAAAACCATGATACGATCTGGCGCCTCGCGTCTTCGCAGTAATCTGAAAGGCGGGAGTCTCGGCAGAAAGGCTTTTGCCACGAACACACCGGGGCTTTCTCGAAAAGAAATTGCACAGTCCTCCTCTGGCGGACTGTTCTCATGGCTCACAGGAAACAACTCTAAATCTCTCCCTCCCCTGGATTTTCCCCTGCCAGGCGTGAATCTTCCGCCTACACTTCCAGATCATGTGGAACCAACAAAGACCATTGTCACGACCCTTCCAAATGGTCTCAAAGTTGCATCCGAAAACTCTTCGAGCCCCACTGCATCAATTGGATTGTACGTTGATTGTGGTTCCGTGTATGAGACCCCGTTGTCCAGCGGGGCAACTCACCTCCTGGAACGAATGGCGTTCAAAACCACAAAGAACCGAAGCCATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTTGACTGGGAGGTTAACGAACAGCTAGTGAAAGTGAAATCAGAGATTGCAGAAATTTCGAACAATCCCCAAAGTTTGATTCTGGAGGCACTGCATTCAGCTGGCTATGCTGGTGCATTAGGGAACCCTCTCATGGCTCCTGAATCTGCTATAAGCAGATTGAATGGCACAATTTTGGAGGAGTTTGTCACAGAAAACTATACTGCTCCACGCATGGTGTTGGCAGCATCTGGAGTGGATCATGAACAACTGCTCTCGTTTGCTGAGCCTTTGTTGGCTGACCTACCCCAGGTTCCTTGCCAGGAGGTGATTAAATCTCAGTACATCGGTGGTGATTTTCGGTGCCAAGCAGATTCACAGAGGACTCATATTGCTCTAGCATTTGAGGTTCCTGGCGGCTGGCACAGTGAAAAAGATGCAATTGCTTTGACAGTTCTGCAGACGCTCATGGGAGGGGGTGGCTCGTTCTCTGCTGGTGGCCCTGGTAAAGGAATGTATTCTCGATTATATCTTCGAGTTTTGAATGAATACCAACAAGTGCAATCATTTTCTGCTTTCAACAGCATGTACAATGATAGTGGCATTTTTGGTATCCATGCAACAACGGGATCAGACTTTGTATCACAGGCTGTGGAGTTGGCCACCAGAGAGCTCTTAGCTGTTGCAACTCCTGGACAAGTCACTGAGGTGGAGCTGAATCGTGCCAAAAATTCTACGAAGTCCGCTGTTTTGATGAATTTGGAATCAAGGATGGTTGTGACAGAGGATATAGGGAGACAAATCTTGACATATGGGCAGAGGAAACCAGTTGAGCATTTCTTGAAGGTTCTCAATGAAGTGACCTTGAATGATATTACAAATATTGCACAGAAAATAATTTCGACACCATTAACCATGGCCTCGTGGGGAGATGTTATCCAGGTCCCAAGCTATGATGGTGTCAGCCGACTGTTTCATTCAAAGTGATGCATAATGACATTCAGAGCATCATTATTTAAATTTTTGATACATTTTTCGGTTACACACATTCAAGAATTGATCGTGAGCAGGTTTGCATGATGAACTTTAGATGCCCTGCATTGTCATCATTCATTTGCCCTTCCTGTAAAATGTGGTTCTGATCGTTAATGATTTGTATTCGGCTCAATATTTCATCTTGAAGCCCATGGTTGTGGCAAATGAAAAATAAGCTGGTTCTGAGAGGTGGGAAATAAATTCCGAAAGTTTTGTTGATCATGTAGTTTTTGTTTCTATATGACCTATTTAGTAGTAAAAATTATGTATTGTTTCAGAATCCATTGTCTTCATAACTGCAGTTTGAAAAATATTGAGTACATAATGTGGAGAATGATTCTTGACCTCTCATTCTCTTATCAAAAGAGCAGTTGAGATTGTGAGATCTGATACGTGCTTCTCATAAACGTTTAAAACTACAGTTGAAATAGAAGCTGAAGCAATCCCTGCATCACAAATCATTCATGTTTCAATTTCACTTGTCAGACTATTTTATTTTTAATTCAAATGATCATGGTTTCTAG

Ace file of the UniGene sp_v1.1_unigene14811

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial processing peptidase alpha subunit, putative (EC:3.4.24.64); K01412 mitochondrial processing peptidase [EC:3.4.24.64]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	mitochondrial processing peptidase alpha	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Oxidative phosphorylation	00190		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	Mitochondrial processing peptidase.	EC:3.4.24.64	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	83%
Blast2go	proteolysis	GO:0006508	Biological Process	83%
Blast2go	electron transport chain	GO:0022900	Biological Process	83%
Blast2go	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	83%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	83%
Blast2go	respiratory chain	GO:0070469	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACF4

Fln msg:

Fln protein: MIRSGASRLRSNLKGGSLGRKAFATNTPGLSRKEIAQSSSGGLFSWLTGNNSKSLPPLDFPLPGVNLPPTLPDHVEPTKTIVTTLPNGLKVASENSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTKNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLDWEVNEQLVKVKSEIAEISNNPQSLILEALHSAGYAGALGNPLMAPESAISRLNGTILEEFVTENYTAPRMVLAASGVDHEQLLSFAEPLLADLPQVPCQEVIKSQYIGGDFRCQADSQRTHIALAFEVPGGWHSEKDAIALTVLQTLMGGGGSFSAGGPGKGMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLNDITNIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTCGTACATTCCTAAGGGCTCATTGGTAGCCCCATGTGACATTACTACACCTTTGAACGTCTCCAATACATGGGTGTAAGAAATGGATGGTCTTAGATGCTACTTTTCATGGAAGGCTGTTCGGAAGTCAGTATATCTTACTTTCTCTTGCTCTAATCACAGTTGTCCTTTTTGTTGGTTTGTTTTCATCTCGTTGCTAGGCAGCTAGGGTTTGCAGCCGAGCACATCAGGGCAATACATCCAAACACTACATCGCTCACAGCTGCAACAAAACC_-_ATGATACGATCTGGCGCCTCGCGTCTTCGCAGTAATCTGAAAGGCGGGAGTCTCGGCAGAAAGGCTTTTGCCACGAACACACCGGGGCTTTCTCGAAAAGAAATTGCACAGTCCTCCTCTGGCGGACTGTTCTCATGGCTCACAGGAAACAACTCTAAATCTCTCCCTCCCCTGGATTTTCCCCTGCCAGGCGTGAATCTTCCGCCTACACTTCCAGATCATGTGGAACCAACAAAGACCATTGTCACGACCCTTCCAAATGGTCTCAAAGTTGCATCCGAAAACTCTTCGAGCCCCACTGCATCAATTGGATTGTACGTTGATTGTGGTTCCGTGTATGAGACCCCGTTGTCCAGCGGGGCAACTCACCTCCTGGAACGAATGGCGTTCAAAACCACAAAGAACCGAAGCCATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTTGACTGGGAGGTTAACGAACAGCTAGTGAAAGTGAAATCAGAGATTGCAGAAATTTCGAACAATCCCCAAAGTTTGATTCTGGAGGCACTGCATTCAGCTGGCTATGCTGGTGCATTAGGGAACCCTCTCATGGCTCCTGAATCTGCTATAAGCAGATTGAATGGCACAATTTTGGAGGAGTTTGTCACAGAAAACTATACTGCTCCACGCATGGTGTTGGCAGCATCTGGAGTGGATCATGAACAACTGCTCTCGTTTGCTGAGCCTTTGTTGGCTGACCTACCCCAGGTTCCTTGCCAGGAGGTGATTAAATCTCAGTACATCGGTGGTGATTTTCGGTGCCAAGCAGATTCACAGAGGACTCATATTGCTCTAGCATTTGAGGTTCCTGGCGGCTGGCACAGTGAAAAAGATGCAATTGCTTTGACAGTTCTGCAGACGCTCATGGGAGGGGGTGGCTCGTTCTCTGCTGGTGGCCCTGGTAAAGGAATGTATTCTCGATTATATCTTCGAGTTTTGAATGAATACCAACAAGTGCAATCATTTTCTGCTTTCAACAGCATGTACAATGATAGTGGCATTTTTGGTATCCATGCAACAACGGGATCAGACTTTGTATCACAGGCTGTGGAGTTGGCCACCAGAGAGCTCTTAGCTGTTGCAACTCCTGGACAAGTCACTGAGGTGGAGCTGAATCGTGCCAAAAATTCTACGAAGTCCGCTGTTTTGATGAATTTGGAATCAAGGATGGTTGTGACAGAGGATATAGGGAGACAAATCTTGACATATGGGCAGAGGAAACCAGTTGAGCATTTCTTGAAGGTTCTCAATGAAGTGACCTTGAATGATATTACAAATATTGCACAGAAAATAATTTCGACACCATTAACCATGGCCTCGTGGGGAGATGTTATCCAGGTCCCAAGCTATGATGGTGTCAGCCGACTGTTTCATTCAAAGTGA___TGCATAATGACATTCAGAGCATCATTATTTAAATTTTTGATACATTTTTCGGTTACACACATTCAAGAATTGATCGTGAGCAGGTTTGCATGATGAACTTTAGATGCCCTGCATTGTCATCATTCATTTGCCCTTCCTGTAAAATGTGGTTCTGATCGTTAATGATTTGTATTCGGCTCAATATTTCATCTTGAAGCCCATGGTTGTGGCAAATGAAAAATAAGCTGGTTCTGAGAGGTGGGAAATAAATTCCGAAAGTTTTGTTGATCATGTAGTTTTTGTTTCTATATGACCTATTTAGTAGTAAAAATTATGTATTGTTTCAGAATCCATTGTCTTCATAACTGCAGTTTGAAAAATATTGAGTACATAATGTGGAGAATGATTCTTGACCTCTCATTCTCTTATCAAAAGAGCAGTTGAGATTGTGAGATCTGATACGTGCTTCTCATAAACGTTTAAAACTACAGTTGAAATAGAAGCTGAAGCAATCCCTGCATCACAAATCATTCATGTTTCAATTTCACTTGTCAGACTATTTTATTTTTAATTCAAATGATCATGGTTTCTAG

Fln Alignment:

sp_v1.1_unigene14811___MIRSGASRLRSNLKGGSLGRKAFATNTPGLSRKEIAQ-SSSGGLFSWLTGNNSKSLPPLDFPLPGVNLPPTLPDHVEPTKTIVTTLPNGLKVASENSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTKNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLDWEVNEQLVKVKSEIAEISNNPQSLILEALHSAGYAGALGNPLMAPESAISRLNGTILEEFVTENYTAPRMVLAASGVDHEQLLSFAEPLLADLPQVPCQEVIKSQYIGGDFRCQADSQRTHIALAFEVPGGWHSEKDAIALTVLQTLMXXXXXXXXXXXXXXMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLNDITNIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK
D5ACF4_______________MLRSGASRVRNNLKIGIHGRQAFATSTPGVSRTEIAQQSSSGGLFSWITGNKSKSLPSLDFPLPGVNLPPTLPDYVEPTKTIVTTLPNGLKVASEDSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTRNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLVDSVRNPVFLDWEVKEQLAKVKSEIAEISSNPQSLILEALHSAGYSGALGNPLMAPESAISRLNGTILEEFVTENYTAPRMVLAASGVNHEQLLSFAEPLLADLPQVPRQEVIKSQYIGGDFRCQADSQRTHVALAFEVPGGWHSEKDAIALTVLQTLMGGGGSFSAGGPGKGMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLDDIASIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1963		3		96	0.99245
1964		3	94		0.95615
1967		96	3		0.99245
1969			3	94	0.960243
1975	96		3		0.993037
1976	96		3		0.993037
1977	96	3			0.993037
1982		3	96		0.993037
1983	3		96		0.993037
1984		3		96	0.993037
1987	3			96	0.993037
2244	53		46		1.0
2342		90	10		0.90298
2344			11	88	0.923564
2346		88	11		0.923564
2348		11		88	0.923564
2349	11		88		0.923564
2350			11	88	0.923564
2351			11	88	0.923564
2352		22		77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain