SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14804

Length: 2435 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14804
ATGGGATTGCTGTTGACGAAATGCACCGGGAATGCGAAATCCATTGTTTTTTCCCTCTTTCTACCAGACGTTCGACTTCGACTTGACTGCTCAGTCGTGACGCCCTAAATTTCCACGATCGGCGCCACAGTTTCTCAACAGCCTTTGCCTTTGAGAGGGTGGCGCGTCCCCACCCTCTGTTAGAATATCGTGCGCTTGTGTTCCGAGATTCTCAATGTCGCCGCGCCACTGCGGCAAAAAAAGCAATTTAATTTGTTTGTCAATGGCAGCATTGGAATGCTCTGTCTTCTTTCCTTGATATGCGGATAGTTATGACCCACTCCACTGGCTTTTTCCTCCTTATTTTGCATGATAATATTCCTTCAACAGATGACTCGTGATATTGATCTTCATTGAAATTCTTATAAATCCCCACTCGTTCCCATTCCCGCTGCACACCCACCTAGCAGTTTGAGTTTGTGAGTTTTACTGTCATTTGAGCAATGAAGGTGGTGTGGGAAGCTTGCGTGGCGTTTTCGCTAGCTTATGTTTACATCTTATTATGGATAGGCACCGCAACGGTGGAAGCCACTCCCTTCCATAGAATTATACCTCCACTCCAATCCCTTTATGGCCGACGCGGCCCCTCTCTGTCTCATGACTATAGAGATGCTCTCACCAAATCCATTCTCTTCTACGAAGGTCAGAGATCTGGCAAACTCCCGCTCAACCAGCGAATGAGATGGAGGGCAGATTCTGCCCTTTCGGATGGAGCTGCAGACCACGTGGATCTGACGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTTGGTTTCCCAATGGCTTTCACGACCACCATGTTGTCATGGAGCGTTTTGGAGTTCGGAGGGCGCATGGGGGATAACCTCGACCATGCAAAAGCCGCTATCCGTTGGGCTACAGATTACCTGCTTAAAGCCACTGCACGTCCCGGTGTTATATACGTGCAGGTAGGCGATCCAAACTTAGATCACAAGTGCTGGGAGAGGCCAGAGGACATGGACACATCTCGCAATGTGTATAAAATCGACGCTGATCATCCTGGATCCGACGTTGCCGCAGAAACTGCTGCAGCGCTGGCAGCGGCATCCATGGTGTTCAGAACAACGGATCCCATTTATTCTAGACACCTTCTGCAAACTGCAATGCAGGTATTTGATTTCGCTGACAAACACAGAGGCGCTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTTTATTGCTCATACTCGGGATATAATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAGAGCCTCAAGGAATTTATCATATATCTCCTACATTCAATCACATGGCCAGAATCTTGGCGCCGAGGATAACGTCAATATATTCAGCTGGGATGAGAAGCATGCAGGAGCGAGGGTTCTTTTGGCCAAGGAAGTTCTGCTAAGAAATTCCAAGTCCCTTGAGGAATACAGGGGCCACGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCAAATTCTCAGGCGCAGTACACACCAGGCGGACTACTTTTCAAAATGAGTGACTGTAATTTGCAATATGTGACGTCCACAACTTTCCTGCTTTTCACTTATGCAAAATACTTGAGAGTTTCCAAGCAAGTGGTGAGATGCGGGAACATGGTAGTCACTCCAACCAGAATACGTACACTTGCAAAAAGACAGGTGGACTACATACTGGGAGACAACCCACTCGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAGCGCATACATCACAGGGGCTCATCTTTGCCTTCGATTTATCAGCATCCCCAAATCATTCCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGCTCCCAACCCAAACAGACTCGTTGGCGCTGTCGTGGGAGGCCCCGACAACAATGACCATTTCTCCGATGAGCGCAATGACTATGCTCACTCTGAACCCACCACTTACATCAATGCTCCTTTGGTTGGATCCCTTGCTTATTTGGCACACAGTTTCGCTTAGCATCTGCTTTCTTCCCTTTTCTGTTCTTTAAACTAACTGTTTTCCTGCCCTCCAGTTGTCTTAGTCGTCGTTTTCAATATGCTGTCATCCCTCATTTCTTTCTCTATCAGTTTTTCCTTTGTTTTGCTTCGTTTCAGAGGATGGGGATGATGCTTTATGTCTGTATATTATTCTGCAGCGGATGTCAATTAGCAGCACATGACGAAGTCAGTCAGTTCAAATAGGAAGTCTTTTCTTGAGTGAGTATCGTAGAGTGTGGGAAGCCGTGGGCTACTCTCATCTCACCTTTCATGTCTGCCAAATTTCAATGAAATATGTATAAATTAATTTATGTGTACATGGCGGCACATGGCATTATTACATCACATAAATTTTATTGTTCAATCATGAAAATGGTTTCAGTTG

Ace file of the UniGene sp_v1.1_unigene14804 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	95%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	97%
Blast2go	endo- -beta-	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulase.	EC:3.2.1.4	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	81%
Blast2go	pattern specification process	GO:0007389	Biological Process	81%
Blast2go	response to nematode	GO:0009624	Biological Process	81%
Blast2go	cellulase activity	GO:0008810	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 9	IPR001701	-	81%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	81%
Blast2go	Six-hairpin glycosidase	IPR012341	-	81%
Blast2go	Glycoside hydrolase, family 9, active site	IPR018221	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O64402

Fln msg:

Fln protein: MKVVWEACVAFSLAYVYILLWIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAADHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVAAETAAALAAASMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNLSYISYIQSHGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLEEYRGHADNFICSLLPGTPNSQAQYTPGGLLFKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLAHSFA*

Protein Length: 517

Fln nts: ATGGGATTGCTGTTGACGAAATGCACCGGGAATGCGAAATCCATTGTTTTTTCCCTCTTTCTACCAGACGTTCGACTTCGACTTGACTGCTCAGTCGTGACGCCCTAAATTTCCACGATCGGCGCCACAGTTTCTCAACAGCCTTTGCCTTTGAGAGGGTGGCGCGTCCCCACCCTCTGTTAGAATATCGTGCGCTTGTGTTCCGAGATTCTCAATGTCGCCGCGCCACTGCGGCAAAAAAAGCAATTTAATTTGTTTGTCAATGGCAGCATTGGAATGCTCTGTCTTCTTTCCTTGATATGCGGATAGTTATGACCCACTCCACTGGCTTTTTCCTCCTTATTTTGCATGATAATATTCCTTCAACAGATGACTCGTGATATTGATCTTCATTGAAATTCTTATAAATCCCCACTCGTTCCCATTCCCGCTGCACACCCACCTAGCAGTTTGAGTTTGTGAGTTTTACTGTCATTTGAGCA_-_ATGAAGGTGGTGTGGGAAGCTTGCGTGGCGTTTTCGCTAGCTTATGTTTACATCTTATTATGGATAGGCACCGCAACGGTGGAAGCCACTCCCTTCCATAGAATTATACCTCCACTCCAATCCCTTTATGGCCGACGCGGCCCCTCTCTGTCTCATGACTATAGAGATGCTCTCACCAAATCCATTCTCTTCTACGAAGGTCAGAGATCTGGCAAACTCCCGCTCAACCAGCGAATGAGATGGAGGGCAGATTCTGCCCTTTCGGATGGAGCTGCAGACCACGTGGATCTGACGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTTGGTTTCCCAATGGCTTTCACGACCACCATGTTGTCATGGAGCGTTTTGGAGTTCGGAGGGCGCATGGGGGATAACCTCGACCATGCAAAAGCCGCTATCCGTTGGGCTACAGATTACCTGCTTAAAGCCACTGCACGTCCCGGTGTTATATACGTGCAGGTAGGCGATCCAAACTTAGATCACAAGTGCTGGGAGAGGCCAGAGGACATGGACACATCTCGCAATGTGTATAAAATCGACGCTGATCATCCTGGATCCGACGTTGCCGCAGAAACTGCTGCAGCGCTGGCAGCGGCATCCATGGTGTTCAGAACAACGGATCCCATTTATTCTAGACACCTTCTGCAAACTGCAATGCAGGTATTTGATTTCGCTGACAAACACAGAGGCGCTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTTTATTGCTCATACTCGGGATATAATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAGAGCCTCAAGGAATTTATCATATATCTCCTACATTCAATCACATGGCCAGAATCTTGGCGCCGAGGATAACGTCAATATATTCAGCTGGGATGAGAAGCATGCAGGAGCGAGGGTTCTTTTGGCCAAGGAAGTTCTGCTAAGAAATTCCAAGTCCCTTGAGGAATACAGGGGCCACGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCAAATTCTCAGGCGCAGTACACACCAGGCGGACTACTTTTCAAAATGAGTGACTGTAATTTGCAATATGTGACGTCCACAACTTTCCTGCTTTTCACTTATGCAAAATACTTGAGAGTTTCCAAGCAAGTGGTGAGATGCGGGAACATGGTAGTCACTCCAACCAGAATACGTACACTTGCAAAAAGACAGGTGGACTACATACTGGGAGACAACCCACTCGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAGCGCATACATCACAGGGGCTCATCTTTGCCTTCGATTTATCAGCATCCCCAAATCATTCCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGCTCCCAACCCAAACAGACTCGTTGGCGCTGTCGTGGGAGGCCCCGACAACAATGACCATTTCTCCGATGAGCGCAATGACTATGCTCACTCTGAACCCACCACTTACATCAATGCTCCTTTGGTTGGATCCCTTGCTTATTTGGCACACAGTTTCGCTTAG___CATCTGCTTTCTTCCCTTTTCTGTTCTTTAAACTAACTGTTTTCCTGCCCTCCAGTTGTCTTAGTCGTCGTTTTCAATATGCTGTCATCCCTCATTTCTTTCTCTATCAGTTTTTCCTTTGTTTTGCTTCGTTTCAGAGGATGGGGATGATGCTTTATGTCTGTATATTATTCTGCAGCGGATGTCAATTAGCAGCACATGACGAAGTCAGTCAGTTCAAATAGGAAGTCTTTTCTTGAGTGAGTATCGTAGAGTGTGGGAAGCCGTGGGCTACTCTCATCTCACCTTTCATGTCTGCCAAATTTCAATGAAATATGTATAAATTAATTTATGTGTACATGGCGGCACATGGCATTATTACATCACATAAATTTTATTGTTCAATCATGAAAATGGTTTCAGTTG

Fln Alignment:

sp_v1.1_unigene14804___MKVVWEACVAFSLAYVYILLWIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAADHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVXXXXXXXXXXASMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNLSYISYIQSHGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLEEYRGHADNFICSLLPGTPNSQAQYTPGGLLFKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVG
O64402_______________MKVVSEACVAFSLAYVYVLLLIGTATVEATPFHRIIPPLQSLYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRGDSALSDGAAGHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHAKAAIRWATDYLLKATARPGVIYVQVGDPNLDHKCWERPEDMDTSRNVYKIDADHPGSDVAAETAAALAAASMVFRTTDPIYSRHLLQTAMQVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNVSYISYIQSHGQNLGGEDNVNIFSWDDKHAGARVLLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYPKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLRMSYMVGYGAKFPERIHHRGSSLPSIYQHPQIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVG

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1157	10	84		0.999846
1213	12	87		1.0
1949		6	93	0.999264

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain